RNA–Protein interactions for RNA: ENST00000569252.5

USB1-215, Transcript of U6 snRNA biogenesis phosphodiesterase 1, human

TSL 4

Gene USB1, Length 573 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USB1-215	ENST00000569252	IQCF2	Q8IXL9	164 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	BLNK	Q8WV28	456 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	RNF141	Q8WVD5	230 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	PHYHIPL	Q96FC7	376 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	LINC00052	Q96N35	136 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	BOLA1	Q9Y3E2	137 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	SMAD5-AS1	Q9Y6J3	95 aa		12	□□□□□ -0.49
USB1-215	ENST00000569252	DYNC2H1	Q8NCM8	4307 aa	Known RBP	12	□□□□□ -0.49
USB1-215	ENST00000569252		A0A087X0K7	114 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	TEX46	H3BTG2	121 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252		K7EQG2	157 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	ISLR	O14498	428 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	HMGB3	O15347	200 aa	Known RBP	11.99	□□□□□ -0.49
USB1-215	ENST00000569252	PSG9	Q00887	426 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	FAM213B	Q8TBF2	198 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	DCANP1	Q8TF63	244 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	SLC50A1	Q9BRV3	221 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	TUBA4B	Q9H853	241 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	CLEC5A	Q9NY25	188 aa		11.99	□□□□□ -0.49
USB1-215	ENST00000569252	SNRPC	P09234	159 aa	Known RBP	11.98	□□□□□ -0.49
USB1-215	ENST00000569252	NBEAP1	P0C6P0	100 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	PYY	P10082	97 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	PSMB3	P49720	205 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	UBE2L3	P68036	154 aa	Known RBP	11.98	□□□□□ -0.49
USB1-215	ENST00000569252	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	FAM167A-AS1	Q96KT0	104 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	UBQLN2	Q9UHD9	624 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	RYR2	Q92736	4967 aa		11.98	□□□□□ -0.49
USB1-215	ENST00000569252	CD7	P09564	240 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	OR10J4	P0C629	311 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	ZNF688	P0C7X2	276 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	STAG3L2	P0CL84	134 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	STAG3L3	P0CL85	134 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	IGLC2	P0DOY2	106 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	PDE6H	Q13956	83 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	PSMG4	Q5JS54	123 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	FAM110A	Q9BQ89	295 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	AAMDC	Q9H7C9	122 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	TMEM167B	Q9NRX6	74 aa		11.97	□□□□□ -0.49
USB1-215	ENST00000569252	TRBV19	A0A075B6N1	114 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252		H3BQ15	152 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	MRPS12	O15235	138 aa	Known RBP	11.96	□□□□□ -0.49
USB1-215	ENST00000569252	H2AFB1	P0C5Y9	115 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	SULT1A2	P50226	295 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	DEFB131A	P59861	70 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	FAM74A1	Q5RGS3	127 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	SFT2D1	Q8WV19	159 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	ZNF586	Q9NXT0	402 aa		11.96	□□□□□ -0.49
USB1-215	ENST00000569252	MAP1LC3B2	A6NCE7	125 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252		H3BTX0	84 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF253	O75346	499 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	EIF3G	O75821	320 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
USB1-215	ENST00000569252	ARL14EPL	P0DKL9	152 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	ALKAL2	Q6UX46	152 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	FXYD5	Q96DB9	178 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	C17orf77	Q96MU5	243 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	MAP1LC3B	Q9GZQ8	125 aa		11.95	□□□□□ -0.5
USB1-215	ENST00000569252	EPPK1	P58107	5090 aa	Known RBP	11.95	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF705E	A8MWA4	302 aa	Predicted RBP	11.94	□□□□□ -0.5
USB1-215	ENST00000569252	GCHFR	P30047	84 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	FHIT	P49789	147 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	RAN	P62826	216 aa	Known RBP	11.94	□□□□□ -0.5
USB1-215	ENST00000569252	EBLN2	Q6P2I7	272 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	LYPD1	Q8N2G4	141 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF738	Q8NE65	137 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	MAP6D1	Q9H9H5	199 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF331	Q9NQX6	463 aa	Predicted RBP	11.94	□□□□□ -0.5
USB1-215	ENST00000569252	PRELID1	Q9Y255	219 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	SACS	Q9NZJ4	4579 aa		11.94	□□□□□ -0.5
USB1-215	ENST00000569252	IFNA7	P01567	189 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	HBE1	P02100	147 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	CSN1S1	P47710	185 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	FGF8	P55075	233 aa	Predicted RBP	11.93	□□□□□ -0.5
USB1-215	ENST00000569252	BLOC1S1	P78537	153 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	PSG3	Q16557	428 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	APRG1	Q8IVJ8	170 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	STH	Q8IWL8	128 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252		Q8N1Y9	231 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	FAM24B	Q8N5W8	94 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	DEFB125	Q8N687	156 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	MBD3L1	Q8WWY6	194 aa		11.93	□□□□□ -0.5
USB1-215	ENST00000569252	SAT2	Q96F10	170 aa	Predicted RBP	11.93	□□□□□ -0.5
USB1-215	ENST00000569252	HUWE1	Q7Z6Z7	4374 aa	Known RBP	11.92	□□□□□ -0.5
USB1-215	ENST00000569252	SOCS3	O14543	225 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	PPT1	P50897	306 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF726P1	Q15940	193 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	IGFL4	Q6B9Z1	124 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	CMTM2	Q8TAZ6	248 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	ZNF503	Q96F45	646 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	SRD5A3	Q9H8P0	318 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	PLA2G2E	Q9NZK7	142 aa		11.92	□□□□□ -0.5
USB1-215	ENST00000569252	ODF3L2	Q3SX64	289 aa		11.91	□□□□□ -0.5
USB1-215	ENST00000569252	TEX261	Q6UWH6	196 aa		11.91	□□□□□ -0.5
USB1-215	ENST00000569252	RNF182	Q8N6D2	247 aa		11.91	□□□□□ -0.5
USB1-215	ENST00000569252	RXFP4	Q8TDU9	374 aa		11.91	□□□□□ -0.5
USB1-215	ENST00000569252	NKX6-2	Q9C056	277 aa	Predicted RBP	11.91	□□□□□ -0.5
USB1-215	ENST00000569252	TRAV8-2	A0A0B4J237	113 aa		11.9	□□□□□ -0.5
USB1-215	ENST00000569252		A0A1B0GV50	99 aa		11.9	□□□□□ -0.5
USB1-215	ENST00000569252	PGP	A6NDG6	321 aa		11.9	□□□□□ -0.5
USB1-215	ENST00000569252	DUSP14	O95147	198 aa	Known RBP	11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms