RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PLA2G2EQ9NZK7 142 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 VPS13DQ5THJ4 4388 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 A0A0J9YWU9 116 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 SPRY2O43597 315 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 APOC4P55056 127 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 RAB31Q13636 194 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 OR4B1Q8NGF8 309 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 SLC35B3Q9H1N7 401 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 XCL2Q9UBD3 114 aa10.1□□□□□ -0.79
CLN3-235ENST00000568497 hCG_2014768A0A024R1R8 64 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 PRAC2D3DTV9 90 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 H3BMM0 161 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 GIPP09681 153 aaPredicted RBP10.09□□□□□ -0.79
CLN3-235ENST00000568497 RPL29P47914 159 aaKnown RBP10.09□□□□□ -0.79
CLN3-235ENST00000568497 SNRPD3P62318 126 aaKnown RBP10.09□□□□□ -0.79
CLN3-235ENST00000568497 Q6ZRG5 221 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 OR2T35Q8NGX2 323 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 PARD6GQ9BYG4 376 aaPredicted RBP10.09□□□□□ -0.79
CLN3-235ENST00000568497 SEPSECSQ9HD40 501 aaKnown RBP10.09□□□□□ -0.79
CLN3-235ENST00000568497 PFDN2Q9UHV9 154 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 PKHD1P08F94 4074 aa10.09□□□□□ -0.79
CLN3-235ENST00000568497 RNF222A6NCQ9 220 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 HMGB3O15347 200 aaKnown RBP10.08□□□□□ -0.8
CLN3-235ENST00000568497 PRM2P04554 102 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 PET100P0DJ07 73 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 RPL7P18124 248 aaKnown RBP10.08□□□□□ -0.8
CLN3-235ENST00000568497 NUP62P37198 522 aaPredicted RBP10.08□□□□□ -0.8
CLN3-235ENST00000568497 PSMB3P49720 205 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 CMC4P56277 68 aaPredicted RBP10.08□□□□□ -0.8
CLN3-235ENST00000568497 FFAR4Q5NUL3 377 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 FAM78BQ5VT40 261 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 BLNKQ8WV28 456 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 RNF183Q96D59 192 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 SLC25A2Q9BXI2 301 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 ZNF586Q9NXT0 402 aa10.08□□□□□ -0.8
CLN3-235ENST00000568497 ID1P41134 155 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 RAB2AP61019 212 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 HSD17B11Q8NBQ5 300 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 ZNF738Q8NE65 137 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 OR11H2Q8NH07 326 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 LRRC20Q8TCA0 184 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 FAM167A-AS1Q96KT0 104 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 SH3BGRL3Q9H299 93 aa10.07□□□□□ -0.8
CLN3-235ENST00000568497 SAV1Q9H4B6 383 aaPredicted RBP10.07□□□□□ -0.8
CLN3-235ENST00000568497 IGHV3OR16-12A0A075B7B8 117 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 KIR2DL5BA0A0G2JN68 375 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 KIR2DL5BA0A0G2JPC4 375 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 ISLRO14498 428 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 OR10J4P0C629 311 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 IGLC2P0DOY2 106 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 HLA-DRB4P13762 266 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 S100A7P31151 101 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 KIR2DL5AQ8N109 375 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 ZNF709Q8N972 641 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 OR11H4Q8NGC9 324 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 OR1L4Q8NGR5 311 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 KIR2DL5BQ8NHK3 375 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 SCGB1C1Q8TD33 95 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 HLA-DRB4X5D2U9 266 aa10.06□□□□□ -0.8
CLN3-235ENST00000568497 DNAH6Q9C0G6 4158 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 A0A0J9YX75 114 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 M0R3E3 92 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 IFNA5P01569 189 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 HIST1H1AQ02539 215 aaPredicted RBP10.05□□□□□ -0.8
CLN3-235ENST00000568497 KIR3DS1Q14943 382 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 RPL7L1Q6DKI1 246 aaKnown RBP10.05□□□□□ -0.8
CLN3-235ENST00000568497 LINC00336Q6ZUF6 198 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 Q6ZWC4 215 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 EXOC3-AS1Q8N2X6 119 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 ZNF503Q96F45 646 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 MFFQ9GZY8 342 aa10.05□□□□□ -0.8
CLN3-235ENST00000568497 ELOA3CA0A087WX78 387 aaPredicted RBP10.04□□□□□ -0.8
CLN3-235ENST00000568497 A0A087X0K7 114 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 M0R2Z0 102 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 ARPC5O15511 151 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 NDUFB4O95168 129 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 CNN1P51911 297 aaKnown RBP10.04□□□□□ -0.8
CLN3-235ENST00000568497 PSG3Q16557 428 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 SPINK13Q1W4C9 94 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 PXDC1Q5TGL8 231 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 FAM122CQ6P4D5 195 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 FOXI2Q6ZQN5 318 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 BPIFA4PQ86YQ2 179 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 PHLDA1Q8WV24 401 aaPredicted RBP10.04□□□□□ -0.8
CLN3-235ENST00000568497 AQP10Q96PS8 301 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 RARRES2Q99969 163 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 TNFSF18Q9UNG2 199 aa10.04□□□□□ -0.8
CLN3-235ENST00000568497 TRAV12-2A0A075B6T6 113 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 A0A1B0GVY2 172 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 J3KRW8 73 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 UBE2CO00762 179 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 MPDU1O75352 247 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 RBMY1A1P0DJD3 496 aaKnown RBP10.03□□□□□ -0.8
CLN3-235ENST00000568497 RBMY1CP0DJD4 496 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 ATP6V0CP27449 155 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 ERCC8Q13216 396 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 RBMY1FQ15415 496 aaKnown RBP10.03□□□□□ -0.8
CLN3-235ENST00000568497 EBLN2Q6P2I7 272 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 ZNF767PQ75MW2 155 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 CSNK1G2-AS1Q8NCQ2 148 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms