RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 HMSDA8MTL9 139 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 H3BMM0 161 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 TCTE3Q8IZS6 198 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 SAT2Q96F10 170 aaPredicted RBP14.34□□□□□ -0.11
CLN3-225ENST00000566824 RCHY1Q96PM5 261 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 HRH4Q9H3N8 390 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 ZNF331Q9NQX6 463 aaPredicted RBP14.34□□□□□ -0.11
CLN3-225ENST00000566824 TMEM14CQ9P0S9 112 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 U3KQK5 164 aa14.34□□□□□ -0.11
CLN3-225ENST00000566824 KIR2DL5BA0A0G2JN68 375 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 KIR2DL5BA0A0G2JPC4 375 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 IGKV3-20P01619 116 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 ZNF705DP0CH99 300 aaPredicted RBP14.33□□□□□ -0.12
CLN3-225ENST00000566824 ZNF705BP0CI00 300 aaPredicted RBP14.33□□□□□ -0.12
CLN3-225ENST00000566824 C4BPBP20851 252 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 APOC4P55056 127 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 KIR2DL5AQ8N109 375 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 OR2G3Q8NGZ4 309 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 KIR2DL5BQ8NHK3 375 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 SPATA25Q9BR10 227 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 MRPL32Q9BYC8 188 aaKnown RBP14.33□□□□□ -0.12
CLN3-225ENST00000566824 CSTL1Q9H114 145 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 SAV1Q9H4B6 383 aaPredicted RBP14.33□□□□□ -0.12
CLN3-225ENST00000566824 RNF24Q9Y225 148 aa14.33□□□□□ -0.12
CLN3-225ENST00000566824 NDUFB4O95168 129 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 HLA-DRB4P13762 266 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 DEFB135Q30KP9 77 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 LRRC20Q8TCA0 184 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 OVOL2Q9BRP0 275 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 PSMG3Q9BT73 122 aaPredicted RBP14.32□□□□□ -0.12
CLN3-225ENST00000566824 ZMAT4Q9H898 229 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 HLA-DRB4X5D2U9 266 aa14.32□□□□□ -0.12
CLN3-225ENST00000566824 BORCS7-ASMTA0A0B4J1R7 106 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 A0A0J9YX75 114 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 ZNF705FA8MVS1 300 aaPredicted RBP14.31□□□□□ -0.12
CLN3-225ENST00000566824 OR10J4P0C629 311 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 M6PRP20645 277 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 ZNF345Q14585 488 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 PSG3Q16557 428 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 ACOT6Q3I5F7 207 aaPredicted RBP14.31□□□□□ -0.12
CLN3-225ENST00000566824 SAMD13Q5VXD3 122 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 FAM122CQ6P4D5 195 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 LCN15Q6UWW0 184 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 FOXI2Q6ZQN5 318 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 OR10G4Q8NGN3 311 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 OR10G9Q8NGN4 311 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 OR10G7Q8NGN6 311 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 FXYD5Q96DB9 178 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 RPRMQ9NS64 109 aa14.31□□□□□ -0.12
CLN3-225ENST00000566824 TRBV19A0A075B6N1 114 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 PRAC2D3DTV9 90 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 TAAR5O14804 337 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 HMGB3O15347 200 aaKnown RBP14.3□□□□□ -0.12
CLN3-225ENST00000566824 CA1P00915 261 aaPredicted RBP14.3□□□□□ -0.12
CLN3-225ENST00000566824 HIST1H1EP10412 219 aaKnown RBP14.3□□□□□ -0.12
CLN3-225ENST00000566824 RHOBP62745 196 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 AKAP14Q86UN6 197 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 RPP25LQ8N5L8 163 aaKnown RBP14.3□□□□□ -0.12
CLN3-225ENST00000566824 ZNF738Q8NE65 137 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 BLNKQ8WV28 456 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 OR51M1Q9H341 326 aa14.3□□□□□ -0.12
CLN3-225ENST00000566824 FXYD7P58549 80 aa14.29□□□□□ -0.12
CLN3-225ENST00000566824 SSX7Q7RTT5 188 aa14.29□□□□□ -0.12
CLN3-225ENST00000566824 ARPC5LQ9BPX5 153 aa14.29□□□□□ -0.12
CLN3-225ENST00000566824 PAXXQ9BUH6 204 aa14.29□□□□□ -0.12
CLN3-225ENST00000566824 PLA2G2EQ9NZK7 142 aa14.29□□□□□ -0.12
CLN3-225ENST00000566824 UBE2CO00762 179 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 JTBO76095 146 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 LGALSLQ3ZCW2 172 aaPredicted RBP14.28□□□□□ -0.12
CLN3-225ENST00000566824 Q6ZWC4 215 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 TMUB2Q71RG4 321 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 OR4B1Q8NGF8 309 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 RNF141Q8WVD5 230 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 RNF183Q96D59 192 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 SLC50A1Q9BRV3 221 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 CLEC5AQ9NY25 188 aa14.28□□□□□ -0.12
CLN3-225ENST00000566824 A0A0D9SG52 128 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 BCL2L11O43521 198 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 OR7C2O60412 319 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 C1QBP02746 253 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 NBEAP1P0C6P0 100 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 SERF2P84101 59 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 GUK1Q16774 197 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 EBLN2Q6P2I7 272 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 EXOC3-AS1Q8N2X6 119 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 RPUSD4Q96CM3 377 aaKnown RBP14.27□□□□□ -0.12
CLN3-225ENST00000566824 GNPNAT1Q96EK6 184 aaPredicted RBP14.27□□□□□ -0.12
CLN3-225ENST00000566824 PHYHIPLQ96FC7 376 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 SLC35B3Q9H1N7 401 aa14.27□□□□□ -0.12
CLN3-225ENST00000566824 A8MTW9 85 aa14.26□□□□□ -0.13
CLN3-225ENST00000566824 M0R3E3 92 aa14.26□□□□□ -0.13
CLN3-225ENST00000566824 SPRY2O43597 315 aa14.26□□□□□ -0.13
CLN3-225ENST00000566824 CNN1P51911 297 aaKnown RBP14.26□□□□□ -0.13
CLN3-225ENST00000566824 AMTNQ6UX39 209 aa14.26□□□□□ -0.13
CLN3-225ENST00000566824 A0A1W2PPV4 95 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 ZNF253O75346 499 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 SPP1P10451 314 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 ZNF726P1Q15940 193 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 KHDC3LQ587J8 217 aa14.25□□□□□ -0.13
CLN3-225ENST00000566824 TMEM41BQ5BJD5 291 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms