RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ALG5Q9Y673 324 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 PXMP4Q9Y6I8 212 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 C17orf112F2Z3M2 114 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 MRPS12O15235 138 aaKnown RBP9.73□□□□□ -0.85
CLK3-216ENST00000564468 AMBPP02760 352 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 PMS2P11Q13670 270 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 CLINT1Q14677 625 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 PSG3Q16557 428 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 GUK1Q16774 197 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 C11orf45Q8TAV5 145 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 RNF126Q9BV68 326 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 MED28Q9H204 178 aa9.73□□□□□ -0.85
CLK3-216ENST00000564468 KLK5Q9Y337 293 aaPredicted RBP9.73□□□□□ -0.85
CLK3-216ENST00000564468 TRAV8-2A0A0B4J237 113 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 SMIM9A6NGZ8 99 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 A8MTW9 85 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 F6UB75 175 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 CXCL3P19876 107 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 RPL12P30050 165 aaKnown RBP9.72□□□□□ -0.85
CLK3-216ENST00000564468 DEFB1P60022 68 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 Q8NAQ8 132 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 THAP6Q8TBB0 222 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 NEU1Q99519 415 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 HRH4Q9H3N8 390 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 HSPB11Q9Y547 144 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 X6R8D5 127 aa9.72□□□□□ -0.85
CLK3-216ENST00000564468 IGHV4-28A0A0C4DH34 117 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 IFNA5P01569 189 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 CEMP1Q6PRD7 247 aaPredicted RBP9.71□□□□□ -0.86
CLK3-216ENST00000564468 RNF182Q8N6D2 247 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 ASB13Q8WXK3 278 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 ATP5SQ99766 215 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 WDR61Q9GZS3 305 aaKnown RBP9.71□□□□□ -0.86
CLK3-216ENST00000564468 ZNF331Q9NQX6 463 aaPredicted RBP9.71□□□□□ -0.86
CLK3-216ENST00000564468 MBD2Q9UBB5 411 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 GOLT1BQ9Y3E0 138 aa9.71□□□□□ -0.86
CLK3-216ENST00000564468 DEFB4AO15263 64 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 CNN1P51911 297 aaKnown RBP9.7□□□□□ -0.86
CLK3-216ENST00000564468 FXYD7P58549 80 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 RGS21Q2M5E4 152 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 IGFL4Q6B9Z1 124 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 ZNF705AQ6ZN79 300 aaPredicted RBP9.7□□□□□ -0.86
CLK3-216ENST00000564468 OR8A1Q8NGG7 326 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 SCGB1C1Q8TD33 95 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 PHLDA1Q8WV24 401 aaPredicted RBP9.7□□□□□ -0.86
CLK3-216ENST00000564468 SLC35B3Q9H1N7 401 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 PPP1R14DQ9NXH3 145 aa9.7□□□□□ -0.86
CLK3-216ENST00000564468 TMEM189A5PLL7 270 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 ZNF253O75346 499 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 RBMY1A1P0DJD3 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-216ENST00000564468 RBMY1CP0DJD4 496 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 IGLC2P0DOY2 106 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 RHOBP62745 196 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 RBMY1FQ15415 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-216ENST00000564468 MORN5Q5VZ52 161 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 RPUSD4Q96CM3 377 aaKnown RBP9.69□□□□□ -0.86
CLK3-216ENST00000564468 IGF2BP2-AS1Q96M15 143 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 TMEM14CQ9P0S9 112 aa9.69□□□□□ -0.86
CLK3-216ENST00000564468 STARD9Q9P2P6 4700 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 TRAV5A0A0B4J249 113 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 ZNF705FA8MVS1 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 C11orf94C9JXX5 98 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 ZNF705DP0CH99 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 ZNF705BP0CI00 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 HIST1H1EP10412 219 aaKnown RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 HLA-DMBP28068 263 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 NANOS2P60321 138 aaKnown RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 HIST1H1AQ02539 215 aaPredicted RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 FCN2Q15485 313 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 AMTNQ6UX39 209 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 OR11H7Q8NGC8 314 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 OR10J6PQ8NGY7 276 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 TMEM208Q9BTX3 173 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 MRPL32Q9BYC8 188 aaKnown RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 PARD6GQ9BYG4 376 aaPredicted RBP9.68□□□□□ -0.86
CLK3-216ENST00000564468 RFNGQ9Y644 331 aa9.68□□□□□ -0.86
CLK3-216ENST00000564468 H3BQ15 152 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 BOLA2-SMG1P6H3BVE0 249 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 INSP01308 110 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 HBE1P02100 147 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 PDE6HQ13956 83 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 SAT2Q96F10 170 aaPredicted RBP9.67□□□□□ -0.86
CLK3-216ENST00000564468 SMIM3Q9BZL3 60 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 PRELID1Q9Y255 219 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 TIMM9Q9Y5J7 89 aa9.67□□□□□ -0.86
CLK3-216ENST00000564468 TRBV19A0A075B6N1 114 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 TEX48A0A1B0GUV7 120 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 SNRPCP09234 159 aaKnown RBP9.66□□□□□ -0.86
CLK3-216ENST00000564468 GIPP09681 153 aaPredicted RBP9.66□□□□□ -0.86
CLK3-216ENST00000564468 SPINK13Q1W4C9 94 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 GCSAMLQ5JQS6 135 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 MRPL53Q96EL3 112 aaKnown RBP9.66□□□□□ -0.86
CLK3-216ENST00000564468 KRTAP17-1Q9BYP8 105 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 ZNF586Q9NXT0 402 aa9.66□□□□□ -0.86
CLK3-216ENST00000564468 H3BTX0 84 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 M0R2Z0 102 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 SLC17A3O00476 420 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 SPART-AS1P0CW21 52 aa9.65□□□□□ -0.86
CLK3-216ENST00000564468 TSPOP30536 169 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms