RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 Q6ZS92 163 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 SHANK2-AS3Q9BTD1 123 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 MALRD1Q5VYJ5 2156 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 D6R8Y8 96 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 M0R3E3 92 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 PPBPP02775 128 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 CRIP1P50238 77 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 PAX2Q02962 417 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 RNASE6Q93091 150 aaKnown RBP11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 AP1S3Q96PC3 154 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 EP300Q09472 2414 aaPredicted RBP11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 CNOT1A5YKK6 2376 aaKnown RBP11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 LOXL1Q08397 574 aaPredicted RBP11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 Q6AWC8 147 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 IGFL3Q6UXB1 125 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 SIGLEC15Q6ZMC9 328 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 RPEQ96AT9 228 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 C8orf49Q96NF6 230 aa11.05□□□□□ -0.64
VPS9D1-202ENST00000561976 A0A0G2JNJ9 132 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 K7EM74 188 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 IL4P05112 153 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 FCGR2BP31994 310 aaPredicted RBP11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 PIP4P1Q86T03 277 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 KAAG1Q9UBP8 84 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 Q9UFV3 132 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 H3BRN7 92 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 BUB1B-PAK6H3BSN5 160 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 THBDP07204 575 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 FXYD7P58549 80 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 SEC11AP67812 179 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 TNFRSF14Q92956 283 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 PRELID3AQ96N28 172 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 SIGLEC8Q9NYZ4 499 aa11.04□□□□□ -0.64
VPS9D1-202ENST00000561976 TMEM213A2RRL7 107 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 GAGE10A6NGK3 116 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 LYZL1Q6UWQ5 148 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 GATD1Q8NB37 220 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 S4R3C0 116 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 TMEM189A5PLL7 270 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 IGLV1-47P01700 117 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 AMN1Q8IY45 258 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 RNF125Q96EQ8 232 aa11.03□□□□□ -0.64
VPS9D1-202ENST00000561976 PCNX1Q96RV3 2341 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 A0A1W2PRD5 423 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 A0A1W2PRF3 423 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 A0A1W2PRM7 423 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 CACNG7P62955 275 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 LYPD1Q8N2G4 141 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 AAMDCQ9H7C9 122 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 RABAC1Q9UI14 185 aa11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 RALYQ9UKM9 306 aaKnown RBP11.02□□□□□ -0.64
VPS9D1-202ENST00000561976 TPRP12270 2363 aaKnown RBP11.02□□□□□ -0.65
VPS9D1-202ENST00000561976 A0A096LNJ9 63 aa11.02□□□□□ -0.65
VPS9D1-202ENST00000561976 K7ERU9 68 aa11.02□□□□□ -0.65
VPS9D1-202ENST00000561976 ZNF491Q8N8L2 437 aa11.02□□□□□ -0.65
VPS9D1-202ENST00000561976 K7EIM0 57 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 PRRG2O14669 202 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 ORMDL3Q8N138 153 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 ZNF414Q96IQ9 312 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 DCHS1Q96JQ0 3298 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 SELENOKQ9Y6D0 94 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 A6NDN8 102 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 FAM104BQ5XKR9 115 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 ZNF493Q6ZR52 646 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 THYN1Q9P016 225 aa11.01□□□□□ -0.65
VPS9D1-202ENST00000561976 FGF6P10767 208 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 APOBEC3AP31941 199 aaPredicted RBP11□□□□□ -0.65
VPS9D1-202ENST00000561976 HILPDAQ9Y5L2 63 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 LYNX1G3V0Z9 82 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 LYNX1P0DP58 116 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 LGALS9BQ3B8N2 356 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 KLF17Q5JT82 389 aaPredicted RBP11□□□□□ -0.65
VPS9D1-202ENST00000561976 LGALS9CQ6DKI2 356 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 CACNA1HO95180 2353 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 MGAQ8IWI9 3026 aa11□□□□□ -0.65
VPS9D1-202ENST00000561976 GNG7O60262 68 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 SH2D1AO60880 128 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 GTF2H5Q6ZYL4 71 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 PIP4P2Q8N4L2 257 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 OR1N2Q8NGR9 330 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 NAA38Q9BRA0 125 aaKnown RBP10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 A1L4Q6 167 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 H3BUT2 72 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 HBDP02042 147 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 MRPL51Q4U2R6 128 aaKnown RBP10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 TMEM190Q8WZ59 177 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 DPF1Q92782 380 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 PPIAL4CA0A0B4J2A2 164 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 E7EQL1 145 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 SMKR1H3BMG3 65 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 PPIAL4GP0DN37 164 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 CKS2P33552 79 aa10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 BCL6BQ8N143 479 aaPredicted RBP10.99□□□□□ -0.65
VPS9D1-202ENST00000561976 TMEM238C9JI98 176 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 SMAD7O15105 426 aaKnown RBP10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 NMUP48645 174 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 TWIST1Q15672 202 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 WFDC3Q8IUB2 231 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 BOD1L2Q8IYS8 172 aa10.98□□□□□ -0.65
VPS9D1-202ENST00000561976 RAB37Q96AX2 223 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms