RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ZNF835Q9Y2P0 537 aa1.93□□□□□ -2.1
SPG11-223ENST00000560858 WASHC3Q9Y3C0 194 aa1.93□□□□□ -2.1
SPG11-223ENST00000560858 TNRC18O15417 2968 aaPredicted RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 PRUNE2Q8WUY3 3088 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGLV5-37A0A075B6J1 123 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LOC105371242A0A075B767 164 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TRAV30A0A087WSZ9 112 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LOC102724200A0A096LPH7 203 aaPredicted RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGLV5-52A0A0A0MRZ9 124 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TRAV5A0A0B4J249 113 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGHV1-24A0A0C4DH33 117 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGHV2-70DA0A0C4DH43 119 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 A0A1B0GW15 77 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 OR4C46A6NHA9 309 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 C17orf100A8MU93 164 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 A8MWL6 223 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TEX22C9J3V5 150 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 H3BRN7 92 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TMEM178BH3BS89 294 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 M0R296 226 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 M0R2Z0 102 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SPINK4O60575 86 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 MOSP00540 346 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 RBP4P02753 201 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 PPBPP02775 128 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TCRAP04437 139 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SLC25A5P05141 298 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 LIPFP07098 398 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 CRYGBP07316 175 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 OR5AL1P0C617 328 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 NBEAP1P0C6P0 100 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGLC1P0CG04 106 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 IGLL1P15814 213 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 CCL3L1P16619 93 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LOXP28300 417 aaPredicted RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 MC5RP33032 325 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 RPL27AP46776 148 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 LGALS7P47929 136 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TFPI2P48307 235 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SUB1P53999 127 aaKnown RBP eCLIP1.92□□□□□ -2.1
SPG11-223ENST00000560858 FOXA3P55318 350 aaPredicted RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 RBX1P62877 108 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 GNG5P63218 68 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 ADIPOQQ15848 244 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 BATFQ16520 125 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 MAJINQ3KP22 176 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 VMA21Q3ZAQ7 101 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 Q56UQ5 140 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LRRC10Q5BKY1 277 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LCE3EQ5T5B0 92 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LINC01545Q5VT33 79 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 Q6AWC8 147 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 ETFRF1Q6IPR1 90 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LCN12Q6JVE5 192 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 RNASEKQ6P5S7 137 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 UNQ5815/PRO19632Q6UWF5 114 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 PET117Q6UWS5 81 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LINC00322Q6ZN03 302 aaPredicted RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 RBPMS2Q6ZRY4 209 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 Q6ZS92 163 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SSX8Q7RTT4 187 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 LINC00305Q7Z4B0 112 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 KRTAP7-1Q8IUC3 87 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 FAM19A2Q8N3H0 131 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 KIR3DL3Q8N743 410 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TMEM75Q8N9X5 138 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TEX45Q8NA69 505 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 ZNF738Q8NE65 137 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 OR2D3Q8NGH3 330 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 OR2T6Q8NHC8 308 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 FAM57AQ8TBR7 257 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 GTSF1Q8WW33 167 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 C22orf15Q8WYQ4 148 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 H1FXQ92522 213 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 RND1Q92730 232 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 TNFRSF14Q92956 283 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 BORCS7Q96B45 105 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 FLYWCH2Q96CP2 140 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 LINC00479Q96M42 142 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 CCL13Q99616 98 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SRSF8Q9BRL6 282 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 NDFIP1Q9BT67 221 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 FAM103A1Q9BTL3 118 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 TMEM70Q9BUB7 260 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 MS4A6AQ9H2W1 248 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 Q9H3A6 140 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 OTORQ9NRC9 128 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 CLEC5AQ9NY25 188 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 CBY1Q9Y3M2 126 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 F11RQ9Y624 299 aaKnown RBP1.92□□□□□ -2.1
SPG11-223ENST00000560858 USP34Q70CQ2 3546 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 GPR179Q6PRD1 2367 aa1.92□□□□□ -2.1
SPG11-223ENST00000560858 SPEGQ15772 3267 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 TRBV19A0A075B6N1 114 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 A0A096LNJ9 63 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 TRAV34A0A0B4J273 112 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 SERTM2A0A1B0GWG4 89 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 PGPA6NDG6 321 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 LINC01546A6NGU7 62 aa1.91□□□□□ -2.1
SPG11-223ENST00000560858 SH2D7A6NKC9 451 aaPredicted RBP1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms