RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OR10G4Q8NGN3 311 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 OR10G9Q8NGN4 311 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 OR10G7Q8NGN6 311 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 ZNF586Q9NXT0 402 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 PLA2G2EQ9NZK7 142 aa16.12■□□□□ 0.17
SNX1-210ENST00000560260 ISLRO14498 428 aa16.11■□□□□ 0.17
SNX1-210ENST00000560260 HLA-DMBP28068 263 aa16.11■□□□□ 0.17
SNX1-210ENST00000560260 SSX7Q7RTT5 188 aa16.11■□□□□ 0.17
SNX1-210ENST00000560260 C16orf92Q96LL3 132 aa16.11■□□□□ 0.17
SNX1-210ENST00000560260 RPRMQ9NS64 109 aa16.11■□□□□ 0.17
SNX1-210ENST00000560260 KNCNA6PVL3 124 aa16.1■□□□□ 0.17
SNX1-210ENST00000560260 CMC4P56277 68 aaPredicted RBP16.1■□□□□ 0.17
SNX1-210ENST00000560260 RNF182Q8N6D2 247 aa16.1■□□□□ 0.17
SNX1-210ENST00000560260 SAT2Q96F10 170 aaPredicted RBP16.1■□□□□ 0.17
SNX1-210ENST00000560260 HRH4Q9H3N8 390 aa16.1■□□□□ 0.17
SNX1-210ENST00000560260 TUBA4BQ9H853 241 aa16.1■□□□□ 0.17
SNX1-210ENST00000560260 SNRPD3P62318 126 aaKnown RBP16.09■□□□□ 0.17
SNX1-210ENST00000560260 TMEM41BQ5BJD5 291 aa16.09■□□□□ 0.17
SNX1-210ENST00000560260 LCN15Q6UWW0 184 aa16.09■□□□□ 0.17
SNX1-210ENST00000560260 STOML3Q8TAV4 291 aa16.09■□□□□ 0.17
SNX1-210ENST00000560260 FXYD5Q96DB9 178 aa16.09■□□□□ 0.17
SNX1-210ENST00000560260 LINC00052Q96N35 136 aa16.09■□□□□ 0.17
SNX1-210ENST00000560260 HMGB3O15347 200 aaKnown RBP16.08■□□□□ 0.16
SNX1-210ENST00000560260 HIST1H1EP10412 219 aaKnown RBP16.08■□□□□ 0.16
SNX1-210ENST00000560260 ID1P41134 155 aa16.08■□□□□ 0.16
SNX1-210ENST00000560260 CDC34P49427 236 aaPredicted RBP16.08■□□□□ 0.16
SNX1-210ENST00000560260 ZNF726P1Q15940 193 aa16.08■□□□□ 0.16
SNX1-210ENST00000560260 PAXXQ9BUH6 204 aa16.08■□□□□ 0.16
SNX1-210ENST00000560260 OR51M1Q9H341 326 aa16.08■□□□□ 0.16
SNX1-210ENST00000560260 ZNF331Q9NQX6 463 aaPredicted RBP16.08■□□□□ 0.16
SNX1-210ENST00000560260 TRBV19A0A075B6N1 114 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 OR7C2O60412 319 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 NDUFB4O95168 129 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 MBP02144 154 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 OR10J4P0C629 311 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 PRB4P10163 310 aaPredicted RBP16.07■□□□□ 0.16
SNX1-210ENST00000560260 GDF5OSQ5U4N7 250 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 SAMD13Q5VXD3 122 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 BAP18Q8IXM2 172 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 B9D2Q9BPU9 175 aa16.07■□□□□ 0.16
SNX1-210ENST00000560260 A0A1W2PPV4 95 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 F6UB75 175 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 KHDC3LQ587J8 217 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 SBSPONQ8IVN8 264 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 RAB24Q969Q5 203 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 ASCL2Q99929 193 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 AGRNO00468 2067 aa16.06■□□□□ 0.16
SNX1-210ENST00000560260 SEC11BP0C7V7 166 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 TPT1P13693 172 aaKnown RBP16.05■□□□□ 0.16
SNX1-210ENST00000560260 RPL35AP18077 110 aaKnown RBP16.05■□□□□ 0.16
SNX1-210ENST00000560260 TAS2R45P59539 299 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 UBE2L3P68036 154 aaKnown RBP16.05■□□□□ 0.16
SNX1-210ENST00000560260 GUK1Q16774 197 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 ACTL10Q5JWF8 245 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 AKR1C8PQ5T2L2 129 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 BLNKQ8WV28 456 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 RNF141Q8WVD5 230 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 SLC50A1Q9BRV3 221 aa16.05■□□□□ 0.16
SNX1-210ENST00000560260 LOC102724200A0A096LPH7 203 aaPredicted RBP16.04■□□□□ 0.16
SNX1-210ENST00000560260 STAG3L2P0CL84 134 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 STAG3L3P0CL85 134 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 EIF5AP63241 154 aaKnown RBP16.04■□□□□ 0.16
SNX1-210ENST00000560260 TRPT1Q86TN4 253 aaKnown RBP16.04■□□□□ 0.16
SNX1-210ENST00000560260 LRRC20Q8TCA0 184 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 TMED6Q8WW62 240 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 PHYHIPLQ96FC7 376 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 BOLA1Q9Y3E2 137 aa16.04■□□□□ 0.16
SNX1-210ENST00000560260 ZNF253O75346 499 aa16.03■□□□□ 0.16
SNX1-210ENST00000560260 NBEAP1P0C6P0 100 aa16.03■□□□□ 0.16
SNX1-210ENST00000560260 HAGHQ16775 308 aa16.03■□□□□ 0.16
SNX1-210ENST00000560260 ACTR3CQ9C0K3 210 aaPredicted RBP16.03■□□□□ 0.16
SNX1-210ENST00000560260 ARL14EPLP0DKL9 152 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 HLA-DRB4P13762 266 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 FHITP49789 147 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 PSG3Q16557 428 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 PQLC2Q6ZP29 291 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 FOXI2Q6ZQN5 318 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 SLC51BQ86UW2 128 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 ZNF738Q8NE65 137 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 SAV1Q9H4B6 383 aaPredicted RBP16.02■□□□□ 0.16
SNX1-210ENST00000560260 HLA-DRB4X5D2U9 266 aa16.02■□□□□ 0.16
SNX1-210ENST00000560260 CTXND1A0A1B0GTU2 59 aa16.01■□□□□ 0.15
SNX1-210ENST00000560260 H3BMM0 161 aa16.01■□□□□ 0.15
SNX1-210ENST00000560260 BOLA2-SMG1P6H3BVE0 249 aa16.01■□□□□ 0.15
SNX1-210ENST00000560260 PDE6HQ13956 83 aa16.01■□□□□ 0.15
SNX1-210ENST00000560260 STHQ8IWL8 128 aa16.01■□□□□ 0.15
SNX1-210ENST00000560260 A0A0J9YX75 114 aa16■□□□□ 0.15
SNX1-210ENST00000560260 ZNF705FA8MVS1 300 aaPredicted RBP16■□□□□ 0.15
SNX1-210ENST00000560260 PRAC2D3DTV9 90 aa16■□□□□ 0.15
SNX1-210ENST00000560260 EXOC3-AS1Q8N2X6 119 aa16■□□□□ 0.15
SNX1-210ENST00000560260 COL7A1Q02388 2944 aa16■□□□□ 0.15
SNX1-210ENST00000560260 M0R3E3 92 aa15.99■□□□□ 0.15
SNX1-210ENST00000560260 ZNF705DP0CH99 300 aaPredicted RBP15.99■□□□□ 0.15
SNX1-210ENST00000560260 ZNF705BP0CI00 300 aaPredicted RBP15.99■□□□□ 0.15
SNX1-210ENST00000560260 GCHFRP30047 84 aa15.99■□□□□ 0.15
SNX1-210ENST00000560260 RPUSD4Q96CM3 377 aaKnown RBP15.98■□□□□ 0.15
SNX1-210ENST00000560260 RETNQ9HD89 108 aa15.98■□□□□ 0.15
SNX1-210ENST00000560260 UMAD1C9J7I0 102 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 IGKV3-20P01619 116 aa15.97■□□□□ 0.15
SNX1-210ENST00000560260 GIG44P09565 113 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms