RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FNDC10F2Z333 226 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 RPL7P18124 248 aaKnown RBP12.57□□□□□ -0.4
HDDC3-205ENST00000559898 PSG3Q16557 428 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 RRN3P1Q2M238 152 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 MIC13Q5XKP0 118 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 LINC00305Q7Z4B0 112 aa12.57□□□□□ -0.4
HDDC3-205ENST00000559898 C12orf45Q8N5I9 185 aaPredicted RBP12.57□□□□□ -0.4
HDDC3-205ENST00000559898 IGSF23A1L1A6 192 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 TMEM189A5PLL7 270 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 L7N2F9 121 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 M0R2N4 97 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 GOSR2O14653 212 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 H2AFB2P0C5Z0 115 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 BCAP31P51572 246 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 VAMP2P63027 116 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 IL15RAQ13261 267 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 OPCMLQ14982 345 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 SAMD13Q5VXD3 122 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 OR8A1Q8NGG7 326 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 NDUFAF3Q9BU61 184 aa12.56□□□□□ -0.4
HDDC3-205ENST00000559898 NACAE9PAV3 2078 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 H3BQ15 152 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 DUSP14O95147 198 aaKnown RBP12.55□□□□□ -0.4
HDDC3-205ENST00000559898 RAB32Q13637 225 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 C2orf50Q96LR7 162 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 TMEM208Q9BTX3 173 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 NDUFA13Q9P0J0 144 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 HERC2O95714 4834 aa12.55□□□□□ -0.4
HDDC3-205ENST00000559898 BOLA2-SMG1P6H3BVE0 249 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 INSP01308 110 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 CAV2P51636 162 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 RHOBP62745 196 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 IFITM3Q01628 133 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 ZNF846Q147U1 533 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 CNPY1Q3B7I2 92 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 NRARPQ7Z6K4 114 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 ZNF546Q86UE3 836 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 POM121L12Q8N7R1 296 aa12.54□□□□□ -0.4
HDDC3-205ENST00000559898 RPUSD4Q96CM3 377 aaKnown RBP12.54□□□□□ -0.4
HDDC3-205ENST00000559898 ZNF331Q9NQX6 463 aaPredicted RBP12.54□□□□□ -0.4
HDDC3-205ENST00000559898 COX7A2P2O60397 106 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 SIX6O95475 246 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 CAMLGP49069 296 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 S100A10P60903 97 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 TMEM88Q6PEY1 159 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 LRRC20Q8TCA0 184 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 CCDC32Q9BV29 185 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 GGACTQ9BVM4 153 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 WDR83OSQ9Y284 106 aa12.53□□□□□ -0.4
HDDC3-205ENST00000559898 PKD1P98161 4303 aa12.52□□□□□ -0.4
HDDC3-205ENST00000559898 IGLV2-18A0A075B6J9 118 aa12.52□□□□□ -0.41
HDDC3-205ENST00000559898 IGLC2P0DOY2 106 aa12.52□□□□□ -0.41
HDDC3-205ENST00000559898 DAD1P61803 113 aa12.52□□□□□ -0.41
HDDC3-205ENST00000559898 C10orf113Q5VZT2 155 aa12.52□□□□□ -0.41
HDDC3-205ENST00000559898 UBE2L5PA0A1B0GUS4 154 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 FAM240BA0A1B0GVZ2 78 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 RTL8CO15255 209 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 HTN1P15515 57 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 VWC2Q2TAL6 325 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 TMEM252Q8N6L7 170 aa12.51□□□□□ -0.41
HDDC3-205ENST00000559898 SAT2Q96F10 170 aaPredicted RBP12.51□□□□□ -0.41
HDDC3-205ENST00000559898 LYRM2Q9NU23 88 aaPredicted RBP12.51□□□□□ -0.41
HDDC3-205ENST00000559898 P0DMU3 169 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 FAM231AP0DMU4 169 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 FAM231CP0DMU5 169 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 DEFB130BP0DP73 79 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 DEFB130AP0DP74 79 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 S100A7P31151 101 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 ASAH1Q13510 395 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 OXA1LQ15070 435 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 GCSAMLQ5JQS6 135 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 LINC01587Q99440 93 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 DNAJC4Q9NNZ3 241 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 UQCC1Q9NVA1 299 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 ZNF586Q9NXT0 402 aa12.5□□□□□ -0.41
HDDC3-205ENST00000559898 KIAA1109Q2LD37 5005 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 A0A1B0GVY2 172 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 J3KRW8 73 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 PXDC1Q5TGL8 231 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 LCN15Q6UWW0 184 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 BPIFA4PQ86YQ2 179 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 KRTAP17-1Q9BYP8 105 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 PKHD1P08F94 4074 aa12.49□□□□□ -0.41
HDDC3-205ENST00000559898 SULT1A1P50225 295 aa12.48□□□□□ -0.41
HDDC3-205ENST00000559898 NHLH2Q02577 135 aa12.48□□□□□ -0.41
HDDC3-205ENST00000559898 BAXQ07812 192 aa12.48□□□□□ -0.41
HDDC3-205ENST00000559898 SLC39A9Q9NUM3 307 aa12.48□□□□□ -0.41
HDDC3-205ENST00000559898 OR5AC2Q9NZP5 309 aa12.48□□□□□ -0.41
HDDC3-205ENST00000559898 DYNC1H1Q14204 4646 aaKnown RBP12.48□□□□□ -0.41
HDDC3-205ENST00000559898 H0YIZ8 118 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 CT45A10P0DMU9 189 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 CXCL2P19875 107 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 FGF7P21781 194 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 B2MP61769 119 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 GFI1BQ5VTD9 330 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 SLC50A1Q9BRV3 221 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 PPP1R14DQ9NXH3 145 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 PXMP4Q9Y6I8 212 aa12.47□□□□□ -0.41
HDDC3-205ENST00000559898 TEX48A0A1B0GUV7 120 aa12.46□□□□□ -0.41
HDDC3-205ENST00000559898 A6NHS1 94 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms