RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CHCHD1Q96BP2 118 aaKnown RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ADAT3Q96EY9 351 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 AMELYQ99218 206 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 HIST1H4GQ99525 98 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 FAM103A1Q9BTL3 118 aaKnown RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 GGTLC1Q9BX51 225 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PBOV1Q9GZY1 135 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 GTSF1LQ9H1H1 148 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TXNIPQ9H3M7 391 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 VSIRQ9H7M9 311 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 WDR54Q9H977 334 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 LYRM4Q9HD34 91 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OSTCQ9NRP0 149 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 SPANXCQ9NY87 97 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TAC3Q9UHF0 121 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NAT8BQ9UHF3 227 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF391Q9UJN7 358 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 HSPB8Q9UJY1 196 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TSSC4Q9Y5U2 329 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NINQ8N4C6 2090 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 COL4A2P08572 1712 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 HELZP42694 1942 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 DOCK6Q96HP0 2047 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 IGKV1D-8A0A087WSZ0 117 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 LOC102724200A0A096LPH7 203 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GW15 77 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SMIM27A0A1W2PRY6 76 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 IZUMO1RA6ND01 250 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR4C46A6NHA9 309 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 F2Z2F3 143 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 H0Y980 276 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SYS1-DBNDD2H3BUS1 97 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 M0R2Z0 102 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 ISLRO14498 428 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 RAB29O14966 203 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 ERI3O43414 337 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 ANGPTL7O43827 346 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SSSCA1O60232 199 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 CST7O76096 145 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR7C1O76099 320 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 IGLV3-1P01715 115 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 APCSP02743 223 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 P04436 131 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SERPINE2P07093 398 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 HIST1H1EP10412 219 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 FABP2P12104 132 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 CBLN1P23435 193 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 HTR1DP28221 377 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 GRB2P62993 217 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TGFBR3Q03167 851 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 RPL18Q07020 188 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 KLRD1Q13241 179 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 POU2AF1Q16633 256 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 CLEC12BQ2HXU8 276 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SP6Q3SY56 376 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 Q6Q795 121 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM14EPQ6UXP3 125 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 C2orf91Q6ZV80 131 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TCF23Q7RTU1 214 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 CAMK2N1Q7Z7J9 78 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 BPIFA4PQ86YQ2 179 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR2A1Q8NGT9 310 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR10D3Q8NH80 312 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR1L1Q8NH94 360 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 OR51E1Q8TCB6 317 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 PIFOQ8TCI5 191 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 H1FXQ92522 213 aaKnown RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM54Q969K7 222 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 APOBEC3DQ96AK3 386 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TM4SF19Q96DZ7 209 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SPANXDQ9BXN6 97 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM126AQ9H061 195 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 FAM60AQ9NP50 221 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SPANXB1Q9NS25 103 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-208ENST00000559119 PSENENQ9NZ42 101 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 DEC1Q9P2X7 70 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 Q9Y3F1 56 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 LHFPL6Q9Y693 200 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 SPCS1Q9Y6A9 102 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 LINC00312Q9Y6C7 94 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 V9GYV3 84 aa1.91□□□□□ -2.1
VPS13C-208ENST00000559119 MDC1Q14676 2089 aaKnown RBP1.9□□□□□ -2.1
VPS13C-208ENST00000559119 PIKFYVEQ9Y2I7 2098 aa1.9□□□□□ -2.1
VPS13C-208ENST00000559119 ANAPC1Q9H1A4 1944 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TRAV36DV7A0A075B6V5 113 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TRAV25A0A0B4J276 109 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-8A0A0C4DH67 115 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-9A0A0C4DH69 117 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 CENPVL3A0A0U1RRI6 287 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 SPAARA0A1B0GVQ0 90 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1W2PRD5 423 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1W2PRF3 423 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 A0A1W2PRM7 423 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF850A8MQ14 1090 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 C21orf140B9A014 251 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 C4orf51C9J302 202 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM262E9PQX1 116 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 F5H5K5 113 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 H3BMG7 143 aa1.9□□□□□ -2.11
VPS13C-208ENST00000559119 H3BUT2 72 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms