RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ATP5J2P56134 94 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 OR4F17Q8NGA8 305 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 MBD6Q96DN6 1003 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 RCHY1Q96PM5 261 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 MLST8Q9BVC4 326 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 IGHV3-49A0A0A0MS15 119 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 IZUMO1RA6ND01 250 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 SCGB1D1O95968 90 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 IGLV2-11P01706 119 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 CLEC3BP05452 202 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 IGLC2P0DOY2 106 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 BRS3P32247 399 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 RPL19P84098 196 aaKnown RBP8.3□□□□□ -1.08
CUX1-217ENST00000558836 NOL4LQ96MY1 436 aaPredicted RBP8.3□□□□□ -1.08
CUX1-217ENST00000558836 ZNF331Q9NQX6 463 aaPredicted RBP8.3□□□□□ -1.08
CUX1-217ENST00000558836 NAV2Q8IVL1 2488 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 TRAV9-1A0A075B6T8 112 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 IGHV4-30-2A0A087WSY4 118 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 WI2-2373I1.2A0A1W2PRP0 233 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 OOSP1A8MZH6 123 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 BMPR1BO00238 502 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 LTAP01374 205 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 BMI1P35226 326 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 IQCJQ1A5X6 159 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 OR2D3Q8NGH3 330 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 GTSF1Q8WW33 167 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 GRAMD2BQ96HH9 432 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 PGLYRP4Q96LB8 373 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 OTORQ9NRC9 128 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 THYN1Q9P016 225 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 TBL2Q9Y4P3 447 aaKnown RBP8.29□□□□□ -1.08
CUX1-217ENST00000558836 TCAPO15273 167 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 P01737 135 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 IGHV4-38-2P0DP08 117 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 RHOGP84095 191 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 LY6EQ16553 131 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 SIGLEC15Q6ZMC9 328 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 FMC1Q96HJ9 113 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 ZNF414Q96IQ9 312 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 C1RLQ9NZP8 487 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 TMEM14CQ9P0S9 112 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 TEX15Q9BXT5 2789 aa8.29□□□□□ -1.08
CUX1-217ENST00000558836 ZNF207O43670 478 aaKnown RBP8.28□□□□□ -1.08
CUX1-217ENST00000558836 ZNF253O75346 499 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 HLA-DMBP28068 263 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 DAZAP1Q96EP5 407 aaKnown RBP8.28□□□□□ -1.08
CUX1-217ENST00000558836 MRPS12O15235 138 aaKnown RBP8.28□□□□□ -1.08
CUX1-217ENST00000558836 APCSP02743 223 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 COL8A1P27658 744 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 CLEC19AQ6UXS0 136 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 FAM231DQ6ZW35 169 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 Q86TA4 180 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 TSKUQ8WUA8 353 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 ZNF785A8K8V0 405 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 ZNF664Q8N3J9 261 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 ZC2HC1AQ96GY0 325 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 SAMD10Q9BYL1 202 aa8.28□□□□□ -1.08
CUX1-217ENST00000558836 RPP21Q9H633 154 aaKnown RBP8.28□□□□□ -1.08
CUX1-217ENST00000558836 TRAV30A0A087WSZ9 112 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 A1L4Q6 167 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 DDTP30046 118 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 Q6ZWC4 215 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 REC114Q7Z4M0 266 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 FAM19A2Q8N3H0 131 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 MAPK1IP1LQ8NDC0 245 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 OR5R1Q8NH85 324 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 BBC3Q96PG8 261 aaPredicted RBP8.27□□□□□ -1.09
CUX1-217ENST00000558836 PIMREGQ9BSJ6 248 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 RNF114Q9Y508 228 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 ZNF705FA8MVS1 300 aaPredicted RBP8.27□□□□□ -1.09
CUX1-217ENST00000558836 PMCHP20382 165 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 C8orf49Q96NF6 230 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 TPPP3Q9BW30 176 aa8.27□□□□□ -1.09
CUX1-217ENST00000558836 IGKV2-40A0A087WW87 121 aaPredicted RBP8.26□□□□□ -1.09
CUX1-217ENST00000558836 TSTD3H0UI37 97 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 IGKV2D-40P01614 121 aaPredicted RBP8.26□□□□□ -1.09
CUX1-217ENST00000558836 PAX8Q06710 450 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 TDRG1Q3Y452 100 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 TMSB15BA0A087X1C1 80 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 TRBV9A0A0B4J1U6 114 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 C19orf71A6NCJ1 209 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 FOXA3P55318 350 aaPredicted RBP8.26□□□□□ -1.09
CUX1-217ENST00000558836 TOMM20LQ6UXN7 152 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 C10orf105Q8TEF2 133 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 PRSS22Q9GZN4 317 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 PSG8Q9UQ74 426 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 SMAD5-AS1Q9Y6J3 95 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 CCDC168Q8NDH2 2452 aa8.26□□□□□ -1.09
CUX1-217ENST00000558836 MUC21A0A0G2JKD1 596 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 MUC21A0A140T8X8 626 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 DIRC3C9JPN6 131 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 HLA-DQA1P01909 254 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 APOHP02749 345 aaPredicted RBP8.25□□□□□ -1.09
CUX1-217ENST00000558836 ZNF705DP0CH99 300 aaPredicted RBP8.25□□□□□ -1.09
CUX1-217ENST00000558836 ZNF705BP0CI00 300 aaPredicted RBP8.25□□□□□ -1.09
CUX1-217ENST00000558836 PAX1P15863 534 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 MUC21Q5SSG8 566 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 C5orf56Q8N8D9 126 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 Q8TAT8 98 aa8.25□□□□□ -1.09
CUX1-217ENST00000558836 PIFOQ8TCI5 191 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms