RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NPIPB6E9PJ23 425 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 LIPFP07098 398 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 C21orf62-AS1Q17RA5 79 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 CFHR4Q92496 578 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 RNF125Q96EQ8 232 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 NBR2O15453 112 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 COL5A1-AS1Q5SY13 56 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 TRAV9-2A0A087WT02 112 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 NCBP2LA6PVI3 153 aaKnown RBP10.13□□□□□ -0.79
LDLR-207ENST00000558013 HLA-DRB1P01911 266 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 LINC00614P0C842 121 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 UNQ5815/PRO19632Q6UWF5 114 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 BPIFA4PQ86YQ2 179 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 FANCD2OSQ96PS1 177 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 TMEM70Q9BUB7 260 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 TMEM14CQ9P0S9 112 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 DPM3Q9P2X0 92 aa10.13□□□□□ -0.79
LDLR-207ENST00000558013 H3BRN7 92 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 NDUFS7O75251 213 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 FAM106CPP0CH98 169 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 FAM106AQ4KMX7 169 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 ERASQ7Z444 233 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 SMIM12Q96EX1 92 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 TMUB1Q9BVT8 246 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 PSG8Q9UQ74 426 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 OR4C46A6NHA9 309 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 HOXB4P17483 251 aaPredicted RBP10.12□□□□□ -0.79
LDLR-207ENST00000558013 NBL1P41271 181 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 CT83Q5H943 113 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 DMRTA1Q5VZB9 504 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 ZNF414Q96IQ9 312 aa10.12□□□□□ -0.79
LDLR-207ENST00000558013 F8W735 103 aaPredicted RBP10.11□□□□□ -0.79
LDLR-207ENST00000558013 MRPS12O15235 138 aaKnown RBP10.11□□□□□ -0.79
LDLR-207ENST00000558013 OR4F17Q8NGA8 305 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 GNG7O60262 68 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 LEPROTL1O95214 131 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 FXYD7P58549 80 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 LY6G5BQ8NDX9 201 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 SYS1-DBNDD2H3BUS1 97 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 HLA-DMBP28068 263 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 PAX2Q02962 417 aa10.11□□□□□ -0.79
LDLR-207ENST00000558013 IGKV2-40A0A087WW87 121 aaPredicted RBP10.1□□□□□ -0.79
LDLR-207ENST00000558013 OR2T8A6NH00 312 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 IGKV2D-40P01614 121 aaPredicted RBP10.1□□□□□ -0.79
LDLR-207ENST00000558013 KLHDC1Q8N7A1 406 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 GFRA4Q9GZZ7 299 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 C1RLQ9NZP8 487 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 SPG11Q96JI7 2443 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.1□□□□□ -0.79
LDLR-207ENST00000558013 FOXE3Q13461 319 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 PSG3Q16557 428 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 C5orf64Q2M2E5 130 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 Q8TAT8 98 aa10.1□□□□□ -0.79
LDLR-207ENST00000558013 A0A1B0GUT8 65 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 TMEM213A2RRL7 107 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 HAX1O00165 279 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 LOXL1Q08397 574 aaPredicted RBP10.09□□□□□ -0.79
LDLR-207ENST00000558013 MRPL52Q86TS9 123 aaKnown RBP10.09□□□□□ -0.79
LDLR-207ENST00000558013 ZFP36P26651 326 aaKnown RBP10.09□□□□□ -0.79
LDLR-207ENST00000558013 ADORA2A-AS1P86434 159 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 C16orf54Q6UWD8 224 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 OR11H6Q8NGC7 330 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 CRYBG3Q68DQ2 2970 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 LOC105371242A0A075B767 164 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 LOC389332A0A1B0GUA5 103 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 A0A1W2PPR1 153 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 NEU4Q8WWR8 484 aaPredicted RBP10.09□□□□□ -0.79
LDLR-207ENST00000558013 NDFIP1Q9BT67 221 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 ZFP30Q9Y2G7 519 aa10.09□□□□□ -0.79
LDLR-207ENST00000558013 TCF21O43680 179 aa10.08□□□□□ -0.8
LDLR-207ENST00000558013 TCTAP57738 103 aa10.08□□□□□ -0.8
LDLR-207ENST00000558013 SERTM2A0A1B0GWG4 89 aa10.08□□□□□ -0.8
LDLR-207ENST00000558013 WI2-2373I1.2A0A1W2PRP0 233 aa10.08□□□□□ -0.8
LDLR-207ENST00000558013 CSMD2Q7Z408 3487 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 IGLV11-55A0A075B6I3 123 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 SNAI2O43623 268 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 NDUFA3O95167 84 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 NCR2O95944 276 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 TMEM75Q8N9X5 138 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 RNF5Q99942 180 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 SOX21Q9Y651 276 aaPredicted RBP10.07□□□□□ -0.8
LDLR-207ENST00000558013 LYZL1Q6UWQ5 148 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 VMO1Q7Z5L0 202 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 NPBQ8NG41 125 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 ARPC1AQ92747 370 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 CHCHD1Q96BP2 118 aaKnown RBP10.07□□□□□ -0.8
LDLR-207ENST00000558013 RAXQ9Y2V3 346 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 IGHV3OR16-13A0A075B7E8 117 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 IGHV3-74A0A0B4J1X5 117 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 CRXO43186 299 aaPredicted RBP10.07□□□□□ -0.8
LDLR-207ENST00000558013 MPV17L2Q567V2 206 aa10.07□□□□□ -0.8
LDLR-207ENST00000558013 UTP20O75691 2785 aaKnown RBP10.06□□□□□ -0.8
LDLR-207ENST00000558013 IGHV3-66A0A0C4DH42 116 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 FAM231BA6NCW3 169 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 ODF3BA8MYP8 253 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 IFI27P40305 119 aaPredicted RBP10.06□□□□□ -0.8
LDLR-207ENST00000558013 ZNF80P51504 273 aaPredicted RBP10.06□□□□□ -0.8
LDLR-207ENST00000558013 GAGE1Q13065 139 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 AMN1Q8IY45 258 aa10.06□□□□□ -0.8
LDLR-207ENST00000558013 VGLL1Q99990 258 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms