RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 UTF1Q5T230 341 aa10.97□□□□□ -0.65
SHMT2-226ENST00000556825 KLK5Q9Y337 293 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-226ENST00000556825 ZNF441Q8N8Z8 693 aa10.96□□□□□ -0.65
SHMT2-226ENST00000556825 ASCL2Q99929 193 aa10.96□□□□□ -0.65
SHMT2-226ENST00000556825 PAXXQ9BUH6 204 aa10.96□□□□□ -0.65
SHMT2-226ENST00000556825 DYSFO75923 2080 aa10.96□□□□□ -0.65
SHMT2-226ENST00000556825 LINC00473A8K010 186 aa10.96□□□□□ -0.66
SHMT2-226ENST00000556825 ATP5LO75964 103 aa10.96□□□□□ -0.66
SHMT2-226ENST00000556825 FMC1Q96HJ9 113 aa10.96□□□□□ -0.66
SHMT2-226ENST00000556825 AAMDCQ9H7C9 122 aa10.96□□□□□ -0.66
SHMT2-226ENST00000556825 RBAKDNA6NC62 111 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 NCBP2LA6PVI3 153 aaKnown RBP10.95□□□□□ -0.66
SHMT2-226ENST00000556825 TMEM150CB9EJG8 249 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 TIMM23O14925 209 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 CRYGDP07320 174 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 PYYP10082 97 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 MORN5Q5VZ52 161 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 ORMDL3Q8N138 153 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 TIMD4Q96H15 378 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 CHCHD2Q9Y6H1 151 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-226ENST00000556825 AGRNO00468 2067 aa10.95□□□□□ -0.66
SHMT2-226ENST00000556825 HEATR1Q9H583 2144 aaKnown RBP10.95□□□□□ -0.66
SHMT2-226ENST00000556825 RPL13AP40429 203 aaKnown RBP10.94□□□□□ -0.66
SHMT2-226ENST00000556825 TFF2Q03403 129 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 C4orf26Q17RF5 130 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 J3QLI3 93 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 TMEM155Q4W5P6 130 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 NTN5Q8WTR8 489 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-226ENST00000556825 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-226ENST00000556825 FLYWCH2Q96CP2 140 aaKnown RBP10.94□□□□□ -0.66
SHMT2-226ENST00000556825 FOXC2Q99958 501 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 PTPRBP23467 1997 aa10.94□□□□□ -0.66
SHMT2-226ENST00000556825 IGKV1OR2-108A0A075B7D4 117 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 IGHV3OR15-7A0A075B7D8 119 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 K7EM74 188 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 IGFBP4P22692 258 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 EDDM3AQ14507 147 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 DUX4L9Q6RFH8 374 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-226ENST00000556825 HRCT1Q6UXD1 115 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 POM121L12Q8N7R1 296 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 TMEM160Q9NX00 188 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 ARHGEF17Q96PE2 2063 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-226ENST00000556825 IGKV3D-11A0A0A0MRZ8 115 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 TRAV40A0A0B4J280 105 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 LINC00205P59089 165 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 IGFBPL1Q8WX77 278 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 ZNF837Q96EG3 531 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-226ENST00000556825 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 ADAMTS20P59510 1910 aa10.93□□□□□ -0.66
SHMT2-226ENST00000556825 ZNF32P17041 273 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 DLX6P56179 175 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 SEC61GP60059 68 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 EBI3Q14213 229 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 ZNF672Q499Z4 452 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-226ENST00000556825 GAGE2AQ6NT46 116 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 SLC37A2Q8TED4 501 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 PATE1Q8WXA2 126 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 FXYD5Q96DB9 178 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 PRO3102Q9H379 93 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 FAM236AA0A1B0GUQ0 79 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 FAM236BA0A1B0GV22 79 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 K7ESF4 209 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 FAM104BQ5XKR9 115 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 MRPL20Q9BYC9 149 aaKnown RBP10.92□□□□□ -0.66
SHMT2-226ENST00000556825 IMUPQ9GZP8 106 aa10.92□□□□□ -0.66
SHMT2-226ENST00000556825 DIDO1Q9BTC0 2240 aaKnown RBP10.91□□□□□ -0.66
SHMT2-226ENST00000556825 TRIOBPQ9H2D6 2365 aa10.91□□□□□ -0.66
SHMT2-226ENST00000556825 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.91□□□□□ -0.66
SHMT2-226ENST00000556825 LINC01546A6NGU7 62 aa10.91□□□□□ -0.66
SHMT2-226ENST00000556825 LGALS9O00182 355 aa10.91□□□□□ -0.66
SHMT2-226ENST00000556825 LGALS1P09382 135 aaKnown RBP10.91□□□□□ -0.66
SHMT2-226ENST00000556825 SRSF2Q01130 221 aaKnown RBP10.91□□□□□ -0.66
SHMT2-226ENST00000556825 MZT1Q08AG7 82 aa10.91□□□□□ -0.66
SHMT2-226ENST00000556825 TRAV3A0A0B4J244 114 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 PGPA6NDG6 321 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 ZNF56Q15929 161 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 NDUFA11Q86Y39 141 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 PRNDQ9UKY0 176 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 TRGV11A0A075B6L2 103 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 PATE4P0C8F1 98 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 LEPP41159 167 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 ERVK-16P61578 105 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 SRSF9Q13242 221 aaKnown RBP eCLIP10.9□□□□□ -0.66
SHMT2-226ENST00000556825 Q5XG85 94 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 MYOZ3Q8TDC0 251 aa10.9□□□□□ -0.66
SHMT2-226ENST00000556825 SRSF12Q8WXF0 261 aaKnown RBP10.9□□□□□ -0.66
SHMT2-226ENST00000556825 CD3EP07766 207 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 EFNA4P52798 201 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 FAM53AQ6NSI3 398 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-226ENST00000556825 AMN1Q8IY45 258 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 DPH3Q96FX2 82 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 FCGR3BO75015 233 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 CRYGAP11844 174 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 PMVKQ15126 192 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 MRPL51Q4U2R6 128 aaKnown RBP10.89□□□□□ -0.67
SHMT2-226ENST00000556825 ZNF542PQ5EBM4 170 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 ZNF714Q96N38 554 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 MRPL35Q9NZE8 188 aaKnown RBP10.89□□□□□ -0.67
SHMT2-226ENST00000556825 PRO0628Q9UI54 55 aa10.89□□□□□ -0.67
SHMT2-226ENST00000556825 EYSQ5T1H1 3165 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms