RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 F6UB75 175 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 PRB4P10163 310 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-225ENST00000556798 APOC4P55056 127 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 ACOT6Q3I5F7 207 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-225ENST00000556798 LCN15Q6UWW0 184 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 TRPT1Q86TN4 253 aaKnown RBP12.87□□□□□ -0.35
SHMT2-225ENST00000556798 FAM167A-AS1Q96KT0 104 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 SPATA25Q9BR10 227 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 PSMG3Q9BT73 122 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-225ENST00000556798 HRH4Q9H3N8 390 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 ZMAT4Q9H898 229 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 ZNF586Q9NXT0 402 aa12.87□□□□□ -0.35
SHMT2-225ENST00000556798 TAAR5O14804 337 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 M6PRP20645 277 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 RHOBP62745 196 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 CD300CQ08708 224 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 FAM122CQ6P4D5 195 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 OR2G3Q8NGZ4 309 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 ARPC5LQ9BPX5 153 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 TMEM14CQ9P0S9 112 aa12.86□□□□□ -0.35
SHMT2-225ENST00000556798 DEFB135Q30KP9 77 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 FOXI2Q6ZQN5 318 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 ZNF738Q8NE65 137 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 RCHY1Q96PM5 261 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 SLC50A1Q9BRV3 221 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 SAV1Q9H4B6 383 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-225ENST00000556798 ZNF331Q9NQX6 463 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-225ENST00000556798 RPRMQ9NS64 109 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 U3KQK5 164 aa12.85□□□□□ -0.35
SHMT2-225ENST00000556798 A0A0D9SG52 128 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 KIR2DL5BA0A0G2JN68 375 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 KIR2DL5BA0A0G2JPC4 375 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 H3BMM0 161 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR7C2O60412 319 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 JTBO76095 146 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 IGKV3-20P01619 116 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR10J4P0C629 311 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 HLA-DRB4P13762 266 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 KIR2DL5AQ8N109 375 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR10G4Q8NGN3 311 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR10G9Q8NGN4 311 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR10G7Q8NGN6 311 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 KIR2DL5BQ8NHK3 375 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 BLNKQ8WV28 456 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 GNPNAT1Q96EK6 184 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-225ENST00000556798 SAT2Q96F10 170 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-225ENST00000556798 PAXXQ9BUH6 204 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 CSTL1Q9H114 145 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 OR51M1Q9H341 326 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 HLA-DRB4X5D2U9 266 aa12.84□□□□□ -0.35
SHMT2-225ENST00000556798 TRBV19A0A075B6N1 114 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 KANTRA0A1W2PQU2 76 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 HMGB3O15347 200 aaKnown RBP12.83□□□□□ -0.36
SHMT2-225ENST00000556798 BCL2L11O43521 198 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 CA1P00915 261 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-225ENST00000556798 C1QBP02746 253 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 HIST1H1EP10412 219 aaKnown RBP12.83□□□□□ -0.36
SHMT2-225ENST00000556798 C4BPBP20851 252 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 PSG3Q16557 428 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 GUK1Q16774 197 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 FXYD5Q96DB9 178 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF503Q96F45 646 aa12.83□□□□□ -0.36
SHMT2-225ENST00000556798 A0A0J9YX75 114 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 A0A1W2PPV4 95 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 PFDN1O60925 122 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF705DP0CH99 300 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF705BP0CI00 300 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-225ENST00000556798 SERF2P84101 59 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 KHDC3LQ587J8 217 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 EBLN2Q6P2I7 272 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 TMUB2Q71RG4 321 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 OR4B1Q8NGF8 309 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 STAB2Q8WWQ8 2551 aa12.82□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF705FA8MVS1 300 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-225ENST00000556798 UBE2CO00762 179 aa12.81□□□□□ -0.36
SHMT2-225ENST00000556798 NDUFB4O95168 129 aa12.81□□□□□ -0.36
SHMT2-225ENST00000556798 CDC34P49427 236 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-225ENST00000556798 TAS2R45P59539 299 aa12.81□□□□□ -0.36
SHMT2-225ENST00000556798 UBE2L3P68036 154 aaKnown RBP12.81□□□□□ -0.36
SHMT2-225ENST00000556798 TMEM41BQ5BJD5 291 aa12.81□□□□□ -0.36
SHMT2-225ENST00000556798 RPP25LQ8N5L8 163 aaKnown RBP12.81□□□□□ -0.36
SHMT2-225ENST00000556798 RNF141Q8WVD5 230 aa12.81□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF471Q9BX82 626 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-225ENST00000556798 ZNF253O75346 499 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 MBP02144 154 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 GIG44P09565 113 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-225ENST00000556798 SPP1P10451 314 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 FXYD7P58549 80 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 LGALSLQ3ZCW2 172 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-225ENST00000556798 MORN3Q6PF18 240 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-225ENST00000556798 Q6ZWC4 215 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 RPUSD4Q96CM3 377 aaKnown RBP12.8□□□□□ -0.36
SHMT2-225ENST00000556798 PHYHIPLQ96FC7 376 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 OVOL2Q9BRP0 275 aa12.8□□□□□ -0.36
SHMT2-225ENST00000556798 PRAC2D3DTV9 90 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 NBEAP1P0C6P0 100 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 CNN1P51911 297 aaKnown RBP12.79□□□□□ -0.36
SHMT2-225ENST00000556798 HIST1H1AQ02539 215 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-225ENST00000556798 PDE6HQ13956 83 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 SSX7Q7RTT5 188 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms