RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 DPM2O94777 84 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 C6orf226Q5I0X4 101 aa6.62□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE12BA1L429 117 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SERF1AO75920 110 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE7O76087 117 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE12FP0CL80 117 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE12GP0CL81 117 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 GAGE12IP0CL82 117 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SSBP2P81877 361 aaPredicted RBP6.61□□□□□ -1.35
SYNE2-220ENST00000555612 TEX43Q6ZNM6 134 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 A0A1B0GW64 132 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 PAX4O43316 350 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 LAGE3Q14657 143 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 LURAP1LQ8IV03 231 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 K7ERU9 68 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 EREGO14944 169 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 KIF26BQ2KJY2 2108 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SRSF8Q9BRL6 282 aaKnown RBP6.61□□□□□ -1.35
SYNE2-220ENST00000555612 D6R8Y8 96 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV4-39P01824 125 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 MORN3Q6PF18 240 aaPredicted RBP6.61□□□□□ -1.35
SYNE2-220ENST00000555612 AGMATQ9BSE5 352 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 PAX2Q02962 417 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 TMEM14EPQ6UXP3 125 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 FREM3P0C091 2139 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 MUC6Q6W4X9 2439 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SHISA9B4DS77 424 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 CGB7P0DN87 165 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SS18Q15532 418 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 SHANK2-AS3Q9BTD1 123 aa6.61□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV4-30-2A0A087WSY4 118 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 TYMSP04818 313 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 PLNP26678 52 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 FHL1Q13642 323 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 MGAMO43451 1857 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 C15orf62A8K5M9 175 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 IGLV1-44P01699 117 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 ATP5L2Q7Z4Y8 100 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 WDR86Q86TI4 376 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 CSTL1Q9H114 145 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 FER1L5A0AVI2 2057 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV4-61A0A0C4DH41 118 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 PLA2G5P39877 138 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 VPREB3Q9UKI3 123 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 IGHV2-5P01817 119 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 AMBPP02760 352 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 ATRAIDQ6UW56 229 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 KIAA1671Q9BY89 1806 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 A0A0G2JRQ6 117 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 LYL1P12980 280 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 DMRTA1Q5VZB9 504 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 MBD3L1Q8WWY6 194 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 DERL1Q9BUN8 251 aa6.6□□□□□ -1.35
SYNE2-220ENST00000555612 CTAG1AP78358 180 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 QRFPP83859 136 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 SRSF3P84103 164 aaKnown RBP6.59□□□□□ -1.35
SYNE2-220ENST00000555612 C17orf58Q2M2W7 97 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 TEX36Q5VZQ5 186 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 VOPP1Q96AW1 172 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 TRAV12-2A0A075B6T6 113 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 A0A096LPF7 62 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 VCYO14598 125 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 IGKCP01834 107 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 AZU1P20160 251 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 RASL10AQ92737 203 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 TSSC4Q9Y5U2 329 aaPredicted RBP6.59□□□□□ -1.35
SYNE2-220ENST00000555612 A0A1B0GV72 72 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 CDK2AP2O75956 126 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 ANK1P16157 1881 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 ZNF833PQ6ZTB9 187 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 RSPO3Q9BXY4 272 aaPredicted RBP6.59□□□□□ -1.35
SYNE2-220ENST00000555612 ELANEP08246 267 aa6.59□□□□□ -1.35
SYNE2-220ENST00000555612 KLF2Q9Y5W3 355 aaPredicted RBP6.59□□□□□ -1.35
SYNE2-220ENST00000555612 ETV2O00321 342 aaPredicted RBP6.59□□□□□ -1.36
SYNE2-220ENST00000555612 DIAPH2-AS1Q14236 149 aa6.59□□□□□ -1.36
SYNE2-220ENST00000555612 TMEM95Q3KNT9 176 aa6.59□□□□□ -1.36
SYNE2-220ENST00000555612 FAM90A2PQ658T7 463 aa6.59□□□□□ -1.36
SYNE2-220ENST00000555612 GATD1Q8NB37 220 aa6.59□□□□□ -1.36
SYNE2-220ENST00000555612 HEATR1Q9H583 2144 aaKnown RBP6.59□□□□□ -1.36
SYNE2-220ENST00000555612 C22orf46C9J442 243 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 ZNF561-AS1K7EIQ3 104 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 ITGB1BP1O14713 200 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 DDTP30046 118 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 DEFB136Q30KP8 78 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 NIT1Q86X76 327 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 RPP25LQ8N5L8 163 aaKnown RBP6.58□□□□□ -1.36
SYNE2-220ENST00000555612 IFI27L1Q96BM0 104 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 CYTL1Q9NRR1 136 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 TPSG1Q9NRR2 321 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 ARMS2P0C7Q2 107 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 LYPD1Q8N2G4 141 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 DOCK7Q96N67 2140 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 INS-IGF2F8WCM5 200 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 IGKV1-6A0A0C4DH72 117 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 A0A1B0GWB2 263 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 F8WEM9 126 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 NDUFA4O00483 81 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 HOXB4P17483 251 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-220ENST00000555612 Q6ZRM9 215 aa6.58□□□□□ -1.36
SYNE2-220ENST00000555612 SPAG8Q99932 426 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms