RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TIMM9Q9Y5J7 89 aa10.51□□□□□ -0.73
CCDC88C-207ENST00000554051 TENM3Q9P273 2699 aa10.51□□□□□ -0.73
CCDC88C-207ENST00000554051 HUWE1Q7Z6Z7 4374 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-207ENST00000554051 TRAV8-2A0A0B4J237 113 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 A8MTW9 85 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 ZNF705EA8MWA4 302 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 TAS2R45P59539 299 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 PSG9Q00887 426 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 PSG3Q16557 428 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 FAM78BQ5VT40 261 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 OR4B1Q8NGF8 309 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 OR2T35Q8NGX2 323 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 MRPL53Q96EL3 112 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 C17orf77Q96MU5 243 aa10.5□□□□□ -0.73
CCDC88C-207ENST00000554051 A0A0J9YWU9 116 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 HIST1H1EP10412 219 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 CASC10Q5T4H9 136 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 C20orf173Q96LM9 149 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 SMIM3Q9BZL3 60 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 MFFQ9GZY8 342 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 FUT9Q9Y231 359 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 PRELID1Q9Y255 219 aa10.49□□□□□ -0.73
CCDC88C-207ENST00000554051 SMIM9A6NGZ8 99 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 GIG44P09565 113 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 RHOBP62745 196 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 KHDC3LQ587J8 217 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 GDF5OSQ5U4N7 250 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 MORN5Q5VZ52 161 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 OR8A1Q8NGG7 326 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 GOLT1BQ9Y3E0 138 aa10.48□□□□□ -0.73
CCDC88C-207ENST00000554051 TRBV19A0A075B6N1 114 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 FXYD6-FXYD2A0A087WZ82 144 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 BORCS7-ASMTA0A0B4J1R7 106 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 NUPR2A6NF83 97 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 CNN1P51911 297 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 ACOT6Q3I5F7 207 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 FFAR4Q5NUL3 377 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 RNF182Q8N6D2 247 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 CSNK1G2-AS1Q8NCQ2 148 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 OR10J6PQ8NGY7 276 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 RPUSD4Q96CM3 377 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 NEU1Q99519 415 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 PSMG3Q9BT73 122 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 AAMDCQ9H7C9 122 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 XCL2Q9UBD3 114 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 TNFSF18Q9UNG2 199 aa10.47□□□□□ -0.73
CCDC88C-207ENST00000554051 TEX48A0A1B0GUV7 120 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 TMEM189A5PLL7 270 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 F6UB75 175 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 BOLA2-SMG1P6H3BVE0 249 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 INSP01308 110 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 IGKV3-20P01619 116 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 HIST1H1AQ02539 215 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 ZNF705AQ6ZN79 300 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 OR2G3Q8NGZ4 309 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 GNPNAT1Q96EK6 184 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 SAT2Q96F10 170 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 SLC25A2Q9BXI2 301 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 PPP1R14DQ9NXH3 145 aa10.46□□□□□ -0.73
CCDC88C-207ENST00000554051 TRAV5A0A0B4J249 113 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 H3BQ15 152 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 SLC17A3O00476 420 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 TAAR5O14804 337 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 MBP02144 154 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 M6PRP20645 277 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 TSPOP30536 169 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 GCSAMLQ5JQS6 135 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 AMTNQ6UX39 209 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 Q8NAQ8 132 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 IGF2BP2-AS1Q96M15 143 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 ODF3Q96PU9 254 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 PAXXQ9BUH6 204 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 OR51M1Q9H341 326 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 AGRNO00468 2067 aa10.45□□□□□ -0.74
CCDC88C-207ENST00000554051 ZNF705FA8MVS1 300 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 OR7C2O60412 319 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 ZNF705DP0CH99 300 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 ZNF705BP0CI00 300 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 UBE2L3P68036 154 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 SERF2P84101 59 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 PQLC2Q6ZP29 291 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 MIR17HGQ75NE6 70 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 TMEM256Q8N2U0 113 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 FAM167A-AS1Q96KT0 104 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 WFDC1Q9HC57 220 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 ZNF586Q9NXT0 402 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 X6R8D5 127 aa10.44□□□□□ -0.74
CCDC88C-207ENST00000554051 IGHV4-28A0A0C4DH34 117 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 A0A1W2PPV4 95 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 RNF222A6NCQ9 220 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 CXorf65A6NEN9 183 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 PYYP10082 97 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 DEFB1P60022 68 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 ZNF345Q14585 488 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 IGFL4Q6B9Z1 124 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 ZFAND6Q6FIF0 208 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 LYPD1Q8N2G4 141 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 HSD17B11Q8NBQ5 300 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 C11orf45Q8TAV5 145 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 C20orf144Q9BQM9 153 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms