RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 HBBP68871 147 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 RTL8BQ17RB0 113 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 DCUN1D2Q6PH85 259 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 LINC00322Q6ZN03 302 aaPredicted RBP1.06□□□□□ -2.24
VPS29-205ENST00000548539 TEN1Q86WV5 123 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 RTL8AQ9BWD3 113 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 PCBD2Q9H0N5 130 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 HELZ2Q9BYK8 2649 aaKnown RBP1.06□□□□□ -2.24
VPS29-205ENST00000548539 FLG2Q5D862 2391 aaPredicted RBP1.06□□□□□ -2.24
VPS29-205ENST00000548539 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.05□□□□□ -2.24
VPS29-205ENST00000548539 H3BRM9 83 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 FABP1P07148 127 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 VBP1P61758 197 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 PSG9Q00887 426 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 BORCS8Q96FH0 119 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 TMEM138Q9NPI0 162 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 OTORQ9NRC9 128 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 COL6A6A6NMZ7 2263 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 KDM6AO15550 1401 aaPredicted RBP1.05□□□□□ -2.24
VPS29-205ENST00000548539 CD109Q6YHK3 1445 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 DOCK4Q8N1I0 1966 aa1.05□□□□□ -2.24
VPS29-205ENST00000548539 MYO5AQ9Y4I1 1855 aaKnown RBP1.04□□□□□ -2.24
VPS29-205ENST00000548539 A0A087WSZ3 146 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 TRAV5A0A0B4J249 113 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 hDV103S1A0JD37 113 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 MAP1LC3B2A6NCE7 125 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 GPR31O00270 319 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 CST7O76096 145 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 KRTAP26-1Q6PEX3 210 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 ARPINQ7Z6K5 226 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 LRRC18Q8N456 261 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 ZNF431Q8TF32 576 aaPredicted RBP1.04□□□□□ -2.24
VPS29-205ENST00000548539 AMELYQ99218 206 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 SCN3AQ9NY46 2000 aa1.04□□□□□ -2.24
VPS29-205ENST00000548539 NUP98P52948 1817 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 TECTAO75443 2155 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 TRAV27A0A087WT01 109 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 C9orf170A2RU37 121 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 C5orf67F2Z3F1 127 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 NCR3O14931 201 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 MT-ND6P03923 174 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 ANGPTL5Q86XS5 388 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 OR2H1Q9GZK4 316 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 TNFSF18Q9UNG2 199 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 ROCK1Q13464 1354 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 CAMSAP2Q08AD1 1489 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 SYNMO15061 1565 aa1.03□□□□□ -2.24
VPS29-205ENST00000548539 MYH10P35580 1976 aa1.03□□□□□ -2.25
VPS29-205ENST00000548539 H3BQV1 296 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 MGAMO43451 1857 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 COX7CP15954 63 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 RPL35P42766 123 aaKnown RBP1.02□□□□□ -2.25
VPS29-205ENST00000548539 PRB3Q04118 309 aaPredicted RBP1.02□□□□□ -2.25
VPS29-205ENST00000548539 PHF5AQ7RTV0 110 aaKnown RBP1.02□□□□□ -2.25
VPS29-205ENST00000548539 STX12Q86Y82 276 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 OR5AS1Q8N127 324 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 FAM216BQ8N7L0 139 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 NAT8BQ9UHF3 227 aa1.02□□□□□ -2.25
VPS29-205ENST00000548539 CECR2Q9BXF3 1484 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 YTHDC2Q9H6S0 1430 aaKnown RBP1.01□□□□□ -2.25
VPS29-205ENST00000548539 LYRM1O43325 122 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 FABP2P12104 132 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 CIRBPQ14011 172 aaKnown RBP1.01□□□□□ -2.25
VPS29-205ENST00000548539 KRTAP5-10Q6L8G5 202 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 HAGHLQ6PII5 290 aaPredicted RBP1.01□□□□□ -2.25
VPS29-205ENST00000548539 PRR15Q8IV56 129 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 WFDC10AQ9H1F0 79 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 LAMTOR3Q9UHA4 124 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 NUBP2Q9Y5Y2 271 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 V9GYQ6 96 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 NCOA6Q14686 2063 aaPredicted RBP1.01□□□□□ -2.25
VPS29-205ENST00000548539 NUP210LQ5VU65 1888 aa1.01□□□□□ -2.25
VPS29-205ENST00000548539 KMT2BQ9UMN6 2715 aaPredicted RBP1.01□□□□□ -2.25
VPS29-205ENST00000548539 TECPR2O15040 1411 aa1□□□□□ -2.25
VPS29-205ENST00000548539 TRDV1A0A1B0GX56 115 aa1□□□□□ -2.25
VPS29-205ENST00000548539 H7BYZ3 331 aa1□□□□□ -2.25
VPS29-205ENST00000548539 EFNA4P52798 201 aa1□□□□□ -2.25
VPS29-205ENST00000548539 TMEM78Q5T7P6 136 aa1□□□□□ -2.25
VPS29-205ENST00000548539 PLPP5Q8NEB5 264 aa1□□□□□ -2.25
VPS29-205ENST00000548539 LRTM1Q9HBL6 345 aa1□□□□□ -2.25
VPS29-205ENST00000548539 TAF9BQ9HBM6 251 aa1□□□□□ -2.25
VPS29-205ENST00000548539 N4BP2Q86UW6 1770 aaPredicted RBP1□□□□□ -2.25
VPS29-205ENST00000548539 E9PCH4 1651 aa1□□□□□ -2.25
VPS29-205ENST00000548539 MCM3APO60318 1980 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 NCAPD3P42695 1498 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 A0A1W2PRE2 83 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 GABARAPH6UMI1 98 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 KPNA4O00629 521 aaPredicted RBP0.99□□□□□ -2.25
VPS29-205ENST00000548539 PPYP01298 95 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 VMA21Q3ZAQ7 101 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 SELENOSQ9BQE4 189 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 ATPIF1Q9UII2 106 aa0.99□□□□□ -2.25
VPS29-205ENST00000548539 RFX7Q2KHR2 1363 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 TNRC6AQ8NDV7 1962 aaKnown RBP0.98□□□□□ -2.25
VPS29-205ENST00000548539 TRAV23DV6A0A075B6W5 121 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 A0A096LPI6 279 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 IGLV3-32A0A0A0MS00 114 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 PGRMC1O00264 195 aaKnown RBP0.98□□□□□ -2.25
VPS29-205ENST00000548539 S100A11P31949 105 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 HRCT1Q6UXD1 115 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms