RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PRR20CP86479 221 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 PRR20DP86480 221 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 PRR20BP86481 221 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 PRR20AP86496 221 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 GUK1Q16774 197 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 GDF5OSQ5U4N7 250 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF705AQ6ZN79 300 aaPredicted RBP8.56□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF738Q8NE65 137 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 SLC39A9Q9NUM3 307 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 PXMP4Q9Y6I8 212 aa8.56□□□□□ -1.04
HDAC4-216ENST00000544989 PTTG1O95997 202 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 IGKV3-20P01619 116 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 CXCL3P19876 107 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 FGF7P21781 194 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 NANOS2P60321 138 aaKnown RBP8.55□□□□□ -1.04
HDAC4-216ENST00000544989 OPCMLQ14982 345 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 PSG3Q16557 428 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 MIC13Q5XKP0 118 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF709Q8N972 641 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 TMEM37Q8WXS4 190 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 C20orf173Q96LM9 149 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 C17orf77Q96MU5 243 aa8.55□□□□□ -1.04
HDAC4-216ENST00000544989 TRAV8-2A0A0B4J237 113 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF705FA8MVS1 300 aaPredicted RBP8.54□□□□□ -1.04
HDAC4-216ENST00000544989 F6UB75 175 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 DEFB4AO15263 64 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 SIX6O95475 246 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF705DP0CH99 300 aaPredicted RBP8.54□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF705BP0CI00 300 aaPredicted RBP8.54□□□□□ -1.04
HDAC4-216ENST00000544989 RBMY1A1P0DJD3 496 aaKnown RBP8.54□□□□□ -1.04
HDAC4-216ENST00000544989 RBMY1CP0DJD4 496 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 RBMY1FQ15415 496 aaKnown RBP8.54□□□□□ -1.04
HDAC4-216ENST00000544989 LRRC37A5PQ49AS3 106 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 OR5C1Q8NGR4 320 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 C2CD4CQ8TF44 421 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 PPP1R1CQ8WVI7 109 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 NPCDR1Q9BY65 106 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 PPP1R14DQ9NXH3 145 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 RFNGQ9Y644 331 aa8.54□□□□□ -1.04
HDAC4-216ENST00000544989 C17orf112F2Z3M2 114 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 MRPS12O15235 138 aaKnown RBP8.53□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF253O75346 499 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 INSP01308 110 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 HBE1P02100 147 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 CNN1P51911 297 aaKnown RBP8.53□□□□□ -1.04
HDAC4-216ENST00000544989 H2BFSP57053 126 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 RNF182Q8N6D2 247 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 LINC00476Q8WZB0 136 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 IGF2BP2-AS1Q96M15 143 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 TMEM208Q9BTX3 173 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 SLC35B3Q9H1N7 401 aa8.53□□□□□ -1.04
HDAC4-216ENST00000544989 ZNF331Q9NQX6 463 aaPredicted RBP8.53□□□□□ -1.04
HDAC4-216ENST00000544989 HECTD4Q9Y4D8 3996 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 TRAV10A0A0B4J240 114 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 BOLA2-SMG1P6H3BVE0 249 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 MPC2O95563 127 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 SPART-AS1P0CW21 52 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 HLA-DMBP28068 263 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 FXYD7P58549 80 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 DEFB1P60022 68 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 NHLH2Q02577 135 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 PDE6HQ13956 83 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 AMTNQ6UX39 209 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 TMEM256Q8N2U0 113 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 OR11H7Q8NGC8 314 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 OR8A1Q8NGG7 326 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 RPUSD4Q96CM3 377 aaKnown RBP8.52□□□□□ -1.05
HDAC4-216ENST00000544989 OR5AC2Q9NZP5 309 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 TMEM14CQ9P0S9 112 aa8.52□□□□□ -1.05
HDAC4-216ENST00000544989 ALMS1Q8TCU4 4167 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 DNAH10Q8IVF4 4471 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 IGHV3OR16-12A0A075B7B8 117 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 H0YIZ8 118 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 IGLC2P0DOY2 106 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 TSPOP30536 169 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 RHOBP62745 196 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 HIST1H1AQ02539 215 aaPredicted RBP8.51□□□□□ -1.05
HDAC4-216ENST00000544989 CLINT1Q14677 625 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 RRN3P1Q2M238 152 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 IGFL4Q6B9Z1 124 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 OR10J6PQ8NGY7 276 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 ASB13Q8WXK3 278 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 MRPL53Q96EL3 112 aaKnown RBP8.51□□□□□ -1.05
HDAC4-216ENST00000544989 ATP5SQ99766 215 aa8.51□□□□□ -1.05
HDAC4-216ENST00000544989 LY6G6CO95867 125 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 IFNA5P01569 189 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 HIST1H1EP10412 219 aaKnown RBP8.5□□□□□ -1.05
HDAC4-216ENST00000544989 LGALS9CQ6DKI2 356 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 THAP6Q8TBB0 222 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 SCGB1C1Q8TD33 95 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 C20orf144Q9BQM9 153 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 MRPL32Q9BYC8 188 aaKnown RBP8.5□□□□□ -1.05
HDAC4-216ENST00000544989 WDR61Q9GZS3 305 aaKnown RBP8.5□□□□□ -1.05
HDAC4-216ENST00000544989 PRELID1Q9Y255 219 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 HSPB11Q9Y547 144 aa8.5□□□□□ -1.05
HDAC4-216ENST00000544989 LOC102723971A0A1B0GUV8 181 aa8.49□□□□□ -1.05
HDAC4-216ENST00000544989 RPL12P30050 165 aaKnown RBP8.49□□□□□ -1.05
HDAC4-216ENST00000544989 CDKN1BP46527 198 aa8.49□□□□□ -1.05
HDAC4-216ENST00000544989 OXA1LQ15070 435 aa8.49□□□□□ -1.05
HDAC4-216ENST00000544989 SPINK13Q1W4C9 94 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms