RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	NPIPB3	Q92617	1050 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	SGK494	Q96LW2	274 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	SLC25A2	Q9BXI2	301 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	MOS	P00540	346 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	GDF5OS	Q5U4N7	250 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	PATE2	Q6UY27	113 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	OSR1	Q8TAX0	266 aa	Predicted RBP	11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	FAM167A-AS1	Q96KT0	104 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	HIF1AN	Q9NWT6	349 aa		11.94	□□□□□ -0.5
CHFR-223	ENST00000544268	PSMB11	A5LHX3	300 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	MFAP2	P55001	183 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	DLX6	P56179	175 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	OR1L8	Q8NGR8	309 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	ZC2HC1A	Q96GY0	325 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	TIMD4	Q96H15	378 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	URB1-AS1	Q96HZ7	61 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	SLC25A33	Q9BSK2	321 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM167B	Q9NRX6	74 aa		11.93	□□□□□ -0.5
CHFR-223	ENST00000544268	IGKV1D-37	A0A075B6S9	117 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268		A0A1W2PPI3	338 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	MGST1	P10620	155 aa	Known RBP	11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM177	Q53S58	311 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	AP1S3	Q96PC3	154 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	PMCHL2	Q9BQD1	86 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	C9orf118	A6NHY6	69 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268		K7EP34	96 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	SMIM17	P0DL12	118 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	HERV-K104	P63124	156 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM155	Q4W5P6	130 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	OR4C13	Q8NGP0	309 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	FAM168A	Q92567	244 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	IGF2BP2-AS1	Q96M15	143 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268	SPG11	Q96JI7	2443 aa		11.92	□□□□□ -0.5
CHFR-223	ENST00000544268		H3BRM9	83 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268		H3BTX0	84 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM30B	Q3MIR4	351 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	MBD6	Q96DN6	1003 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	CELSR1	Q9NYQ6	3014 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	LEPROTL1	O95214	131 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	CLEC3B	P05452	202 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	IGHV1-8	P0DP01	117 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	PF4V1	P10720	104 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	EFNA4	P52798	201 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	SMAGP	Q0VAQ4	97 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	CHCHD1	Q96BP2	118 aa	Known RBP	11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	SSBP3	Q9BWW4	388 aa	Predicted RBP	11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	ZNF355P	Q9NSJ1	428 aa		11.91	□□□□□ -0.5
CHFR-223	ENST00000544268	OVOL3	O00110	214 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	HTR1D	P28221	377 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	GNG5	P63218	68 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	UBE2L3	P68036	154 aa	Known RBP	11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	ERH	P84090	104 aa	Known RBP	11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM97	Q5BJF2	176 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	NUP35	Q8NFH5	326 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	TSPAN13	O95857	204 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	C8orf88	P0DMB2	117 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	C2orf91	Q6ZV80	131 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM167A	Q8TBQ9	72 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	GRAMD2B	Q96HH9	432 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	FAM110A	Q9BQ89	295 aa		11.9	□□□□□ -0.5
CHFR-223	ENST00000544268	IGHV1-24	A0A0C4DH33	117 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268		A1L4Q6	167 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	SH2D7	A6NKC9	451 aa	Predicted RBP	11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	COX8A	P10176	69 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	LINC00173	Q6ZV60	143 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	FAM231D	Q6ZW35	169 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	SIGMAR1	Q99720	223 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	GTSF1L	Q9H1H1	148 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	FNDC10	F2Z333	226 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	OR5AL1	P0C617	328 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	ORM2	P19652	201 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	COX7A1	P24310	79 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268	BPIFA4P	Q86YQ2	179 aa		11.89	□□□□□ -0.51
CHFR-223	ENST00000544268		A6NDN8	102 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	OR2K2	Q8NGT1	345 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	JMJD8	Q96S16	334 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	MAP1LC3C	Q9BXW4	147 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	COX7A2P2	O60397	106 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268		Q71RC1	249 aa	Predicted RBP	11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	ATP5L2	Q7Z4Y8	100 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	PDPN	Q86YL7	162 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	OR5A1	Q8NGJ0	315 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	BLNK	Q8WV28	456 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	NPFFR1	Q9GZQ6	430 aa		11.88	□□□□□ -0.51
CHFR-223	ENST00000544268	HIST1H1E	P10412	219 aa	Known RBP	11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	PLP1	P60201	277 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	CSMD2	Q7Z408	3487 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	CENPE	Q02224	2701 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	IGHV4-39	P01824	125 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	CD24	P25063	80 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	TCTEX1D4	Q5JR98	221 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	C10orf113	Q5VZT2	155 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	LINC00305	Q7Z4B0	112 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	OR10AG1	Q8NH19	301 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	CCL19	Q99731	98 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	TMEM133	Q9H2Q1	129 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268	TNFRSF18	Q9Y5U5	241 aa		11.87	□□□□□ -0.51
CHFR-223	ENST00000544268		A0A1W2PRE2	83 aa		11.86	□□□□□ -0.51
CHFR-223	ENST00000544268		H3BUT2	72 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms