RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NABP2Q9BQ15 211 aa7.12□□□□□ -1.27
VPS13D-212ENST00000543766 MOB4Q9Y3A3 225 aa7.12□□□□□ -1.27
VPS13D-212ENST00000543766 RBMY1BA6NDE4 496 aaKnown RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 RBMY1EA6NEQ0 496 aaKnown RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 M0R1B8 84 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 RBMY1DP0C7P1 496 aaKnown RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 LINC00271P0C7V0 271 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 RBMY1A1P0DJD3 496 aaKnown RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 GLI4P10075 376 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 PRIMA1Q86XR5 153 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 CCDC140Q96MF4 163 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 SAP30LQ9HAJ7 183 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 ZDBF2Q9HCK1 2354 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 SEC16AO15027 2179 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 CRYM-AS1A6NIL9 109 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 CST7O76096 145 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 WISP1O95388 367 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 PLGLB1Q02325 96 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 MYO7BQ6PIF6 2116 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 NUP37Q8NFH4 326 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 C15orf61A6NNL5 157 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 ZNF672Q499Z4 452 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-212ENST00000543766 PAPPA-AS1Q5QFB9 102 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 CD164L2Q6UWJ8 174 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 TIMM17AQ99595 171 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 PAXXQ9BUH6 204 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 IFI27L2Q9H2X8 130 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 KIF26BQ2KJY2 2108 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 TET1Q8NFU7 2136 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 KNL1Q8NG31 2342 aa7.11□□□□□ -1.27
VPS13D-212ENST00000543766 VSIG8P0DPA2 414 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 CD70P32970 193 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 C2orf91Q6ZV80 131 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 ELSPBP1Q96BH3 223 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 C18orf12Q96KH6 178 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 C1orf147Q96MC9 270 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-212ENST00000543766 SRRM4A7MD48 611 aaKnown RBP7.1□□□□□ -1.27
VPS13D-212ENST00000543766 APCSP02743 223 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 RNASE2P10153 161 aaKnown RBP7.1□□□□□ -1.27
VPS13D-212ENST00000543766 COX7CP15954 63 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 IGKV1-8A0A0C4DH67 115 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 INS-IGF2F8WCM5 200 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 TFF1P04155 84 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 HLA-DRB4P13762 266 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 C12orf74Q32Q52 190 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 ABCA11PQ4W5N1 156 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 CEMP1Q6PRD7 247 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-212ENST00000543766 CYYR1Q96J86 154 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 HLA-DRB4X5D2U9 266 aa7.1□□□□□ -1.27
VPS13D-212ENST00000543766 OVOL3O00110 214 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 IGKV1D-16P01601 117 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 TMEM52Q8NDY8 209 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 CABIN1Q9Y6J0 2220 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 CRXO43186 299 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-212ENST00000543766 ATP5G1P05496 136 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 RRN3P1Q2M238 152 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 C22orf39Q6P5X5 142 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 SRSF12Q8WXF0 261 aaKnown RBP7.09□□□□□ -1.27
VPS13D-212ENST00000543766 IGHV1OR15-9A0A0B4J2B8 117 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 FOXS1O43638 330 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 SFTPDP35247 375 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 DEFB103AP81534 67 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 RUSC1-AS1Q66K80 236 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 OR5C1Q8NGR4 320 aa7.09□□□□□ -1.27
VPS13D-212ENST00000543766 CELSR3Q9NYQ7 3312 aa7.09□□□□□ -1.28
VPS13D-212ENST00000543766 TIMM17BO60830 172 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 BGLAPP02818 100 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 GATA1P15976 413 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-212ENST00000543766 HILS1P60008 231 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 C1orf140Q5VVS0 124 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 HIST1H4GQ99525 98 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 TMEM14AQ9Y6G1 99 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 RIF1Q5UIP0 2472 aaKnown RBP7.08□□□□□ -1.28
VPS13D-212ENST00000543766 IGKV1D-42A0A075B6H8 117 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 MYCNOSP40205 109 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 OR8A1Q8NGG7 326 aa7.08□□□□□ -1.28
VPS13D-212ENST00000543766 H3BT86 120 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 TFF2Q03403 129 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 C20orf204Q6ZNR8 217 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 PI4KAP42356 2102 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 E9PLD3 99 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 C11orf98E9PRG8 122 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 IFI6P09912 130 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 PQLC2Q6ZP29 291 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 NTN5Q8WTR8 489 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-212ENST00000543766 TAC3Q9UHF0 121 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 LINC01548A6NM66 108 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 DSCR4P56555 118 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-212ENST00000543766 ZNF726P1Q15940 193 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 LINC00173Q6ZV60 143 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 MBD6Q96DN6 1003 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 TMEM243Q9BU79 118 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 PCNX3Q9H6A9 2034 aa7.07□□□□□ -1.28
VPS13D-212ENST00000543766 DMDP11532 3685 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 FRMD6-AS1P0C7T7 363 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 ASPHD1Q5U4P2 390 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 CGAP01215 116 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 SEM1Q6ZVN7 128 aa7.06□□□□□ -1.28
VPS13D-212ENST00000543766 PIP4P1Q86T03 277 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms