RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 VSTM5A8MXK1 200 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 C8orf49Q96NF6 230 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 TRBV19A0A075B6N1 114 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 C16orf97H3BN30 126 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 DEFB123Q8N688 67 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 PRO3102Q9H379 93 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 AAMDCQ9H7C9 122 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 SIGLEC8Q9NYZ4 499 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 WNK2Q9Y3S1 2297 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 SMKR1H3BMG3 65 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 PLP1P60201 277 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 MRGPRG-AS1Q2M3A8 158 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 PRSS57Q6UWY2 283 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 ZNF414Q96IQ9 312 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 KIR3DS1Q14943 382 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 PSG3Q16557 428 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 ORMDL3Q8N138 153 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 C18orf15Q96N68 181 aa8.92□□□□□ -0.98
SYNE1-237ENST00000539504 CKS2P33552 79 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 C3orf36Q3SXR2 165 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM155Q4W5P6 130 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 PRSS33Q8NF86 280 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 NUP37Q8NFH4 326 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM14CQ9P0S9 112 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 A0A1B0GW15 77 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 IGKV1-17P01599 117 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 ASCL5Q7RTU5 278 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 IGHV1-3A0A0C4DH29 117 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 FTH1P19P0C7X4 201 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 TWIST1Q15672 202 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 KLF17Q5JT82 389 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM75Q8N9X5 138 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 FER1L6-AS1Q8NA97 138 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 SHANK2-AS3Q9BTD1 123 aa8.91□□□□□ -0.98
SYNE1-237ENST00000539504 CRIP1P50238 77 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 Q6AWC8 147 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 RNF125Q96EQ8 232 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 A0A0G2JLM5 398 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 C9orf118A6NHY6 69 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 ZNF785A8K8V0 405 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 TEX22C9J3V5 150 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 RBPJQ06330 500 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 SIGLEC15Q6ZMC9 328 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 OR2K2Q8NGT1 345 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 IFI27L1Q96BM0 104 aa8.9□□□□□ -0.98
SYNE1-237ENST00000539504 GNG7O60262 68 aa8.9□□□□□ -0.99
SYNE1-237ENST00000539504 HBDP02042 147 aa8.9□□□□□ -0.99
SYNE1-237ENST00000539504 SPTBN2O15020 2390 aa8.9□□□□□ -0.99
SYNE1-237ENST00000539504 LYNX1G3V0Z9 82 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 SMAD7O15105 426 aaKnown RBP8.89□□□□□ -0.99
SYNE1-237ENST00000539504 LYNX1P0DP58 116 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 FAM104BQ5XKR9 115 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 CSTL1Q9H114 145 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 H3BRM9 83 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 I3L2K1 104 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 HSD52Q0P140 79 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 PCP2Q8IVA1 136 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 JMJD8Q96S16 334 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 ACACAQ13085 2346 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 IGKV2-40A0A087WW87 121 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-237ENST00000539504 SH2D1AO60880 128 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 IGKV2D-40P01614 121 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-237ENST00000539504 GCSHP23434 173 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 HES1Q14469 280 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 MRPL51Q4U2R6 128 aaKnown RBP8.89□□□□□ -0.99
SYNE1-237ENST00000539504 C8orf31Q8N9H6 132 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 RNASE6Q93091 150 aaKnown RBP8.89□□□□□ -0.99
SYNE1-237ENST00000539504 SPCS1Q9Y6A9 102 aa8.89□□□□□ -0.99
SYNE1-237ENST00000539504 IGFBPL1Q8WX77 278 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 COL25A1Q9BXS0 654 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-237ENST00000539504 ZGRF1Q86YA3 2104 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 A0A096LNJ9 63 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 DLX6P56179 175 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 RPL24P83731 157 aaKnown RBP8.88□□□□□ -0.99
SYNE1-237ENST00000539504 LGALS9BQ3B8N2 356 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 LGALS9CQ6DKI2 356 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 H3BRN7 92 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 BUB1B-PAK6H3BSN5 160 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 ORM1P02763 201 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 PRSS1P07477 247 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 APOBEC3AP31941 199 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-237ENST00000539504 OR1N2Q8NGR9 330 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 Q8TAT8 98 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 ONECUT1Q9UBC0 465 aa8.88□□□□□ -0.99
SYNE1-237ENST00000539504 RALYQ9UKM9 306 aaKnown RBP8.88□□□□□ -0.99
SYNE1-237ENST00000539504 NPIPB5A8MRT5 1133 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 PRRG2O14669 202 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 FGF6P10767 208 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 IGFL4Q6B9Z1 124 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 C16orf54Q6UWD8 224 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 BCL6BQ8N143 479 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-237ENST00000539504 ZNF491Q8N8L2 437 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 OR9G4Q8NGQ1 327 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 DKK2Q9UBU2 259 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 IGHV3OR16-8A0A075B7F1 116 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 NPYP01303 97 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 IGHV3-23P01764 117 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 BOD1L2Q8IYS8 172 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 CFAP47Q6ZTR5 3102 aa8.87□□□□□ -0.99
SYNE1-237ENST00000539504 FBLL1A6NHQ2 334 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms