RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CRYBB3P26998 211 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 RPL11P62913 178 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 PATE2Q6UY27 113 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 MIR17HGQ75NE6 70 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF680Q8NEM1 530 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 LRRC20Q8TCA0 184 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 SHANK2-AS3Q9BTD1 123 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 RHPN1-AS1Q9BWJ2 59 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 SCRT1Q9BWW7 348 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 KRTAP4-5Q9BYR2 181 aa9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 TECRQ9NZ01 308 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-208ENST00000538933 TMEM213A2RRL7 107 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 HMGB3O15347 200 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 C8orf88P0DMB2 117 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 FOLR2P14207 255 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 CBLN1P23435 193 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 RAB14P61106 215 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 BLOC1S1P78537 153 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 SPATA31B1PQ5VZV4 182 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 LEMD1Q68G75 181 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF767PQ75MW2 155 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 BPIFA4PQ86YQ2 179 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 STXBP6Q8NFX7 210 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 RAB24Q969Q5 203 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 GPR82Q96P67 336 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 SEPSECSQ9HD40 501 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 SMPXQ9UHP9 88 aa9.31□□□□□ -0.92
CLSTN3-208ENST00000538933 MAP1LC3B2A6NCE7 125 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 HELTA6NFD8 242 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 CHEK1O14757 476 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 BUB3O43684 328 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 H2AFB1P0C5Y9 115 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 RPL7P18124 248 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 ATF4P18848 351 aaPredicted RBP9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 GALR1P47211 349 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 FHITP49789 147 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 C1orf194Q5T5A4 169 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 LCN15Q6UWW0 184 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF414Q96IQ9 312 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 MAP1LC3BQ9GZQ8 125 aa9.3□□□□□ -0.92
CLSTN3-208ENST00000538933 TRAV5A0A0B4J249 113 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 A0A1B0GV50 99 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 IZUMO1RA6ND01 250 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 ZNF785A8K8V0 405 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 EIF3GO75821 320 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 CXorf1O96002 111 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 HBE1P02100 147 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 APOHP02749 345 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 CD5P06127 495 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 CSN3P07498 182 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 EDN2P20800 178 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 FGF8P55075 233 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 UBE2L3P68036 154 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 SIGLEC15Q6ZMC9 328 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 PQLC2Q6ZP29 291 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 RBPMS2Q6ZRY4 209 aaKnown RBP9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 TCF24Q7RTU0 167 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 SFT2D1Q8WV19 159 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 PAXXQ9BUH6 204 aa9.29□□□□□ -0.92
CLSTN3-208ENST00000538933 IGKV3-7A0A075B6H7 116 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 ARL14EPLP0DKL9 152 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 PAFAH1B2P68402 229 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 MORN5Q5VZ52 161 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 LGALS9CQ6DKI2 356 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 CEMP1Q6PRD7 247 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 C16orf54Q6UWD8 224 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 SAT2Q96F10 170 aaPredicted RBP9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 SLC25A2Q9BXI2 301 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 OR51M1Q9H341 326 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 PLA2G2EQ9NZK7 142 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 SELENOKQ9Y6D0 94 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 U3KQE9 123 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 HSPG2P98160 4391 aa9.28□□□□□ -0.92
CLSTN3-208ENST00000538933 CXorf65A6NEN9 183 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 NUPR2A6NF83 97 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 DNASE2O00115 360 aaPredicted RBP9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 STAG3L2P0CL84 134 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 STAG3L3P0CL85 134 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 MED14OSP0DP75 135 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 PMS2P11Q13670 270 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 ZNF726P1Q15940 193 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 GTSCR1Q86UQ5 136 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 BLNKQ8WV28 456 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 GLMPQ8WWB7 406 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 TMEM167BQ9NRX6 74 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 MLXQ9UH92 298 aa9.27□□□□□ -0.93
CLSTN3-208ENST00000538933 OR10J4P0C629 311 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 PYYP10082 97 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 GCHFRP30047 84 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 SSX7Q7RTT5 188 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 MBD3L1Q8WWY6 194 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 HRH4Q9H3N8 390 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 SIGLEC8Q9NYZ4 499 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 TMEM14CQ9P0S9 112 aa9.26□□□□□ -0.93
CLSTN3-208ENST00000538933 IFNA1P01562 189 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 SNRPCP09234 159 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 HIST1H1EP10412 219 aaKnown RBP9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 TFPI2P48307 235 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 MEOX2P50222 304 aa9.25□□□□□ -0.93
CLSTN3-208ENST00000538933 PPT1P50897 306 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms