RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 OBP2BQ9NPH6 170 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 NHP2Q9NX24 153 aaKnown RBP5.31□□□□□ -1.56
USP28-207ENST00000538475 PSG8Q9UQ74 426 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 HHLA3Q9XRX5 114 aa5.31□□□□□ -1.56
USP28-207ENST00000538475 CACNA1GO43497 2377 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 IGKV1D-37A0A075B6S9 117 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 TMEM8BA6NDV4 472 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 LINC01549A6NIU2 74 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 DEFB108AA8MXU0 73 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 K7EMI3 77 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 SNAI2O43623 268 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 CSN3P07498 182 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 RFPL3SP0C7P2 107 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 SAA2P0DJI9 122 aaPredicted RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 PLNP26678 52 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 ZNF138P52744 262 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 PDE6HQ13956 83 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 CFAP126Q5VTH2 177 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 MBNL2Q5VZF2 373 aaKnown RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 LINC00322Q6ZN03 302 aaPredicted RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 ZNF833PQ6ZTB9 187 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 TEN1Q86WV5 123 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 VKORC1L1Q8N0U8 176 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 TEX29Q8N6K0 151 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 CD177Q8N6Q3 437 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 RFESDQ8TAC1 157 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 KLF14Q8TD94 323 aaPredicted RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 SRSF12Q8WXF0 261 aaKnown RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 ANAPC13Q9BS18 74 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 HINT2Q9BX68 163 aa5.3□□□□□ -1.56
USP28-207ENST00000538475 RALYQ9UKM9 306 aaKnown RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 KLF13Q9Y2Y9 288 aaPredicted RBP5.3□□□□□ -1.56
USP28-207ENST00000538475 KIAA0100Q14667 2235 aaKnown RBP5.29□□□□□ -1.56
USP28-207ENST00000538475 TRAV12-1A0A0B4J245 112 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 WI2-2373I1.2A0A1W2PRP0 233 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 NCBP2LA6PVI3 153 aaKnown RBP5.29□□□□□ -1.56
USP28-207ENST00000538475 D6R8Y8 96 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 HOXA3O43365 443 aaPredicted RBP5.29□□□□□ -1.56
USP28-207ENST00000538475 CEACAM4O75871 244 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 FSHBP01225 129 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 IGLV2-11P01706 119 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 IGHV3-9P01782 118 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 IL4P05112 153 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 ARMS2P0C7Q2 107 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 ACP1P24666 158 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 ZNF134P52741 427 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 GNG5P63218 68 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 FOXE3Q13461 319 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 MORN5Q5VZ52 161 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 PIP4P1Q86T03 277 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 OR11H6Q8NGC7 330 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 CFHR4Q92496 578 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 NPIPB3Q92617 1050 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 C16orf92Q96LL3 132 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 SRSF8Q9BRL6 282 aaKnown RBP5.29□□□□□ -1.56
USP28-207ENST00000538475 SCNM1Q9BWG6 230 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 CNFNQ9BYD5 112 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 HIGD1AQ9Y241 93 aa5.29□□□□□ -1.56
USP28-207ENST00000538475 TRBV7-3A0A075B6L6 115 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 IGKV1D-17A0A075B6S4 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE12JA6NER3 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 RHODO00212 210 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 TNFRSF13BO14836 293 aaPredicted RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 WNT9BO14905 357 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE7O76087 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 CELA2AP08217 269 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 ZNF688P0C7X2 276 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE12FP0CL80 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE12GP0CL81 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE12IP0CL82 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 SAA1P0DJI8 122 aaPredicted RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 CKS2P33552 79 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 LINC00205P59089 165 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 GAGE4Q13068 117 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 C17orf58Q2M2W7 97 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 MRPL51Q4U2R6 128 aaKnown RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 PRR30Q53SZ7 412 aaPredicted RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 MOGAT3Q86VF5 341 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 LINC00311Q8N616 119 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 Q8N8P6 123 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 ZC2HC1AQ96GY0 325 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 CITED1Q99966 193 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 NAA38Q9BRA0 125 aaKnown RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 TMEM126AQ9H061 195 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 ZNF71Q9NQZ8 489 aaPredicted RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 RPUSD1Q9UJJ7 312 aaKnown RBP5.28□□□□□ -1.56
USP28-207ENST00000538475 NAV3Q8IVL0 2385 aa5.28□□□□□ -1.56
USP28-207ENST00000538475 A0A087WX48 190 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 TRBV7-9A0A0J9YWB2 115 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 CENPVL3A0A0U1RRI6 287 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 SPAARA0A1B0GVQ0 90 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 A0A1W2PQM1 296 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 A0A1W2PRX2 142 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 TIMM8AO60220 97 aaPredicted RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 LHBP01229 141 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 IGKV3-15P01624 115 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 COL8A2P25067 703 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 CENPFP49454 3210 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 FOXG1P55316 489 aaPredicted RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 UBE2D3P61077 147 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms