RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MRPS12O15235 138 aaKnown RBP16.36■□□□□ 0.21
CPSF1-202ENST00000527827 OR5G3P0C626 314 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 CDKN1BP46527 198 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 TMBIM6P55061 237 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 ID3Q02535 119 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 PATE2Q6UY27 113 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 TOMM5Q8N4H5 51 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 RPUSD4Q96CM3 377 aaKnown RBP16.36■□□□□ 0.21
CPSF1-202ENST00000527827 BCL7BQ9BQE9 202 aa16.36■□□□□ 0.21
CPSF1-202ENST00000527827 SLC25A21Q9BQT8 299 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-202ENST00000527827 AP3S2P59780 193 aa16.35■□□□□ 0.21
CPSF1-202ENST00000527827 POLR2GP62487 172 aaKnown RBP eCLIP16.35■□□□□ 0.21
CPSF1-202ENST00000527827 KIR3DS1Q14943 382 aa16.35■□□□□ 0.21
CPSF1-202ENST00000527827 LINC00612Q8N6U2 182 aa16.35■□□□□ 0.21
CPSF1-202ENST00000527827 LRRC20Q8TCA0 184 aa16.35■□□□□ 0.21
CPSF1-202ENST00000527827 GNPNAT1Q96EK6 184 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-202ENST00000527827 SCRT2Q9NQ03 307 aa16.35■□□□□ 0.21
CPSF1-202ENST00000527827 TRAV26-1A0A087WT03 109 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 CCNKO75909 580 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 KRTAP10-2P60368 255 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 SELENOTP62341 195 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 OR5I1Q13606 314 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 OR10J6PQ8NGY7 276 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 PSENENQ9NZ42 101 aa16.34■□□□□ 0.21
CPSF1-202ENST00000527827 H7BYZ3 331 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 ADAP1O75689 374 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 TTC32Q5I0X7 151 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 MCFD2Q8NI22 146 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 RXFP4Q8TDU9 374 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 ZNF503Q96F45 646 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 ARL6Q9H0F7 186 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 Q9H3A6 140 aa16.33■□□□□ 0.2
CPSF1-202ENST00000527827 ZNF701M0R085 212 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-202ENST00000527827 M6PRP20645 277 aa16.32■□□□□ 0.2
CPSF1-202ENST00000527827 HOXA5P20719 270 aa16.32■□□□□ 0.2
CPSF1-202ENST00000527827 RRAS2P62070 204 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-202ENST00000527827 PYDC2Q56P42 97 aa16.32■□□□□ 0.2
CPSF1-202ENST00000527827 C20orf144Q9BQM9 153 aa16.32■□□□□ 0.2
CPSF1-202ENST00000527827 UPK3BQ9BT76 320 aa16.32■□□□□ 0.2
CPSF1-202ENST00000527827 PARD6GQ9BYG4 376 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-202ENST00000527827 ZNF331Q9NQX6 463 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-202ENST00000527827 A0A0J9YY99 117 aa16.31■□□□□ 0.2
CPSF1-202ENST00000527827 DLK1P80370 383 aa16.31■□□□□ 0.2
CPSF1-202ENST00000527827 ESRGQ1W209 222 aa16.31■□□□□ 0.2
CPSF1-202ENST00000527827 ARV1Q9H2C2 271 aa16.31■□□□□ 0.2
CPSF1-202ENST00000527827 V9GYH0 126 aa16.31■□□□□ 0.2
CPSF1-202ENST00000527827 H3BMQ9 156 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 K7EPK0 472 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 SSSCA1O60232 199 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 SNRPCP09234 159 aaKnown RBP16.3■□□□□ 0.2
CPSF1-202ENST00000527827 CXCL2P19875 107 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 ANXA7P20073 488 aaKnown RBP16.3■□□□□ 0.2
CPSF1-202ENST00000527827 BTF3P20290 206 aaKnown RBP16.3■□□□□ 0.2
CPSF1-202ENST00000527827 S100A7AQ86SG5 101 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 SMIM8Q96KF7 97 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 NPVFQ9HCQ7 196 aa16.3■□□□□ 0.2
CPSF1-202ENST00000527827 GFI1BQ5VTD9 330 aa16.29■□□□□ 0.2
CPSF1-202ENST00000527827 LCN15Q6UWW0 184 aa16.29■□□□□ 0.2
CPSF1-202ENST00000527827 TMEM14EPQ6UXP3 125 aa16.29■□□□□ 0.2
CPSF1-202ENST00000527827 DEDD2Q8WXF8 326 aa16.29■□□□□ 0.2
CPSF1-202ENST00000527827 SLC50A1Q9BRV3 221 aa16.29■□□□□ 0.2
CPSF1-202ENST00000527827 A0A1W2PPQ1 181 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 GAGE12BA1L429 117 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 C9orf170A2RU37 121 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 PRAC2D3DTV9 90 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 FNDC10F2Z333 226 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 GAGE7O76087 117 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 METTL15P1P0C7V9 234 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 GAGE12FP0CL80 117 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 GAGE12GP0CL81 117 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 GAGE12IP0CL82 117 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 UBE2MP61081 183 aaKnown RBP16.28■□□□□ 0.2
CPSF1-202ENST00000527827 SLC38A11Q08AI6 406 aa16.28■□□□□ 0.2
CPSF1-202ENST00000527827 MRPS16Q9Y3D3 137 aaKnown RBP16.28■□□□□ 0.2
CPSF1-202ENST00000527827 TEPPQ6URK8 271 aa16.27■□□□□ 0.2
CPSF1-202ENST00000527827 CCDC28AQ8IWP9 274 aa16.27■□□□□ 0.2
CPSF1-202ENST00000527827 RNF24Q9Y225 148 aa16.27■□□□□ 0.2
CPSF1-202ENST00000527827 H3BNG1 76 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 SLC17A3O00476 420 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 RLN2P04090 185 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 PXDC1Q5TGL8 231 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 LINC00305Q7Z4B0 112 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 ZBTB8BQ8NAP8 495 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-202ENST00000527827 ZNF586Q9NXT0 402 aa16.26■□□□□ 0.19
CPSF1-202ENST00000527827 H3BTX0 84 aa16.25■□□□□ 0.19
CPSF1-202ENST00000527827 CCDC190Q86UF4 302 aa16.25■□□□□ 0.19
CPSF1-202ENST00000527827 OR10P1Q8NGE3 313 aa16.25■□□□□ 0.19
CPSF1-202ENST00000527827 SNURFLB1AK76 121 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 NOL3O60936 208 aaKnown RBP16.24■□□□□ 0.19
CPSF1-202ENST00000527827 ARL16Q0P5N6 197 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 MORN5Q5VZ52 161 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 BPIFA4PQ86YQ2 179 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 TMPRSS5Q9H3S3 457 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 MGAT4CQ9UBM8 478 aa16.24■□□□□ 0.19
CPSF1-202ENST00000527827 GOSR2O14653 212 aa16.23■□□□□ 0.19
CPSF1-202ENST00000527827 AGPAT2O15120 278 aa16.23■□□□□ 0.19
CPSF1-202ENST00000527827 ZNF546Q86UE3 836 aa16.23■□□□□ 0.19
CPSF1-202ENST00000527827 TMEM37Q8WXS4 190 aa16.23■□□□□ 0.19
CPSF1-202ENST00000527827 HERC1Q15751 4861 aa16.22■□□□□ 0.19
CPSF1-202ENST00000527827 LINC00854A0A1B0GVQ3 168 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms