RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 PRR20CP86479 221 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 PRR20DP86480 221 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 PRR20BP86481 221 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 PRR20AP86496 221 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 LRRC37A5PQ49AS3 106 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 ZNF705AQ6ZN79 300 aaPredicted RBP11.79□□□□□ -0.52
LSM1-205ENST00000523511 TMEM37Q8WXS4 190 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 C20orf173Q96LM9 149 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 KCNIP2Q9NS61 270 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 SLC39A9Q9NUM3 307 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 RFNGQ9Y644 331 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 PXMP4Q9Y6I8 212 aa11.79□□□□□ -0.52
LSM1-205ENST00000523511 HBE1P02100 147 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 SPART-AS1P0CW21 52 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 CXCL3P19876 107 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 HLA-DMBP28068 263 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 CNN1P51911 297 aaKnown RBP11.78□□□□□ -0.52
LSM1-205ENST00000523511 DEFB1P60022 68 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 MIC13Q5XKP0 118 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 OR5C1Q8NGR4 320 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 IGF2BP2-AS1Q96M15 143 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 SLC35B3Q9H1N7 401 aa11.78□□□□□ -0.52
LSM1-205ENST00000523511 TRAV8-2A0A0B4J237 113 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 TRAV10A0A0B4J240 114 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 ZNF705FA8MVS1 300 aaPredicted RBP11.77□□□□□ -0.53
LSM1-205ENST00000523511 C17orf112F2Z3M2 114 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 ZNF705DP0CH99 300 aaPredicted RBP11.77□□□□□ -0.53
LSM1-205ENST00000523511 ZNF705BP0CI00 300 aaPredicted RBP11.77□□□□□ -0.53
LSM1-205ENST00000523511 NHLH2Q02577 135 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 RNF182Q8N6D2 247 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 PPP1R1CQ8WVI7 109 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 C17orf77Q96MU5 243 aa11.77□□□□□ -0.53
LSM1-205ENST00000523511 A8MTW9 85 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 INSP01308 110 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 HIST1H1AQ02539 215 aaPredicted RBP11.76□□□□□ -0.53
LSM1-205ENST00000523511 OPCMLQ14982 345 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 RRN3P1Q2M238 152 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 IGFL4Q6B9Z1 124 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 OR8A1Q8NGG7 326 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 OR10J6PQ8NGY7 276 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 LINC00476Q8WZB0 136 aa11.76□□□□□ -0.53
LSM1-205ENST00000523511 RPUSD4Q96CM3 377 aaKnown RBP11.76□□□□□ -0.53
LSM1-205ENST00000523511 ZNF331Q9NQX6 463 aaPredicted RBP11.76□□□□□ -0.53
LSM1-205ENST00000523511 NPCDR1Q9BY65 106 aa11.75□□□□□ -0.53
LSM1-205ENST00000523511 OR5AC2Q9NZP5 309 aa11.75□□□□□ -0.53
LSM1-205ENST00000523511 RYR3Q15413 4870 aa11.75□□□□□ -0.53
LSM1-205ENST00000523511 CSMD3Q7Z407 3707 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 IGLL5B9A064 214 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 MRPS12O15235 138 aaKnown RBP11.74□□□□□ -0.53
LSM1-205ENST00000523511 PTTG1O95997 202 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 IFNA5P01569 189 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 TSPOP30536 169 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 EMP1P54849 157 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 H2BFSP57053 126 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 OR11H7Q8NGC8 314 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 SCGB1C1Q8TD33 95 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 TIMM9Q9Y5J7 89 aa11.74□□□□□ -0.53
LSM1-205ENST00000523511 BOLA2-SMG1P6H3BVE0 249 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 ZNF253O75346 499 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 MPC2O95563 127 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 IGLC2P0DOY2 106 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 CLINT1Q14677 625 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 SPINK13Q1W4C9 94 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 LGALS9CQ6DKI2 356 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 AMTNQ6UX39 209 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 Q6ZTC4 211 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 TMEM256Q8N2U0 113 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 THAP6Q8TBB0 222 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 TMEM14CQ9P0S9 112 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 STARD9Q9P2P6 4700 aa11.73□□□□□ -0.53
LSM1-205ENST00000523511 DEFB131BA0A096LNP1 70 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 LOC102723971A0A1B0GUV8 181 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 H0YIZ8 118 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 HIST1H1EP10412 219 aaKnown RBP11.72□□□□□ -0.53
LSM1-205ENST00000523511 RPL12P30050 165 aaKnown RBP11.72□□□□□ -0.53
LSM1-205ENST00000523511 CDKN1BP46527 198 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 C1orf158Q8N1D5 194 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 ATP5SQ99766 215 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 WDR61Q9GZS3 305 aaKnown RBP11.72□□□□□ -0.53
LSM1-205ENST00000523511 PRELID1Q9Y255 219 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 TENM2Q9NT68 2774 aa11.72□□□□□ -0.53
LSM1-205ENST00000523511 TRAV5A0A0B4J249 113 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 SNRPCP09234 159 aaKnown RBP11.71□□□□□ -0.53
LSM1-205ENST00000523511 PDE6HQ13956 83 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 C12orf74Q32Q52 190 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 SAT2Q96F10 170 aaPredicted RBP11.71□□□□□ -0.53
LSM1-205ENST00000523511 LINC01587Q99440 93 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 RNF126Q9BV68 326 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 AAMDCQ9H7C9 122 aa11.71□□□□□ -0.53
LSM1-205ENST00000523511 H3BQ15 152 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 M0R2Z0 102 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 MORN5Q5VZ52 161 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 MRPL53Q96EL3 112 aaKnown RBP11.7□□□□□ -0.54
LSM1-205ENST00000523511 C20orf144Q9BQM9 153 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 NIPSNAP3BQ9BS92 247 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 MRPL32Q9BYC8 188 aaKnown RBP11.7□□□□□ -0.54
LSM1-205ENST00000523511 MED28Q9H204 178 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 HSPB11Q9Y547 144 aa11.7□□□□□ -0.54
LSM1-205ENST00000523511 TRBV19A0A075B6N1 114 aa11.69□□□□□ -0.54
LSM1-205ENST00000523511 OXA1LQ15070 435 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms