RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 EGFEM1PQ0D2K5 195 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 FAM24BQ8N5W8 94 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 SFT2D1Q8WV19 159 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 MBD3L1Q8WWY6 194 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 MGAM2Q2M2H8 2515 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 ZNF705EA8MWA4 302 aaPredicted RBP12.17□□□□□ -0.46
LSM1-204ENST00000522515 SOCS3O14543 225 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 CXorf1O96002 111 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 H2AFB1P0C5Y9 115 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 NBEAP1P0C6P0 100 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 GCHFRP30047 84 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 BEAN1Q3B7T3 259 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 BLNKQ8WV28 456 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 SAT2Q96F10 170 aaPredicted RBP12.17□□□□□ -0.46
LSM1-204ENST00000522515 TMPRSS5Q9H3S3 457 aa12.17□□□□□ -0.46
LSM1-204ENST00000522515 TRBV19A0A075B6N1 114 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 TRAV2A0A0B4J234 112 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 OR4C46A6NHA9 309 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 SLC17A3O00476 420 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 MEOX2P50222 304 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 GUK1Q16774 197 aa12.16□□□□□ -0.46
LSM1-204ENST00000522515 A0A1B0GV50 99 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 NDUFB4O95168 129 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 IFNA7P01567 189 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 IGFL4Q6B9Z1 124 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 IQCF2Q8IXL9 164 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 C16orf92Q96LL3 132 aa12.15□□□□□ -0.46
LSM1-204ENST00000522515 TRAV8-2A0A0B4J237 113 aa12.14□□□□□ -0.47
LSM1-204ENST00000522515 CD7P09564 240 aa12.14□□□□□ -0.47
LSM1-204ENST00000522515 IFITM2Q01629 132 aa12.14□□□□□ -0.47
LSM1-204ENST00000522515 LRRC20Q8TCA0 184 aa12.14□□□□□ -0.47
LSM1-204ENST00000522515 ZNF331Q9NQX6 463 aaPredicted RBP12.14□□□□□ -0.47
LSM1-204ENST00000522515 ZNF688P0C7X2 276 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 PDE6HQ13956 83 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 RNF182Q8N6D2 247 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 SUN5Q8TC36 379 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 PRR25Q96S07 402 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 UBQLN2Q9UHD9 624 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 TRAV1-1A0A0B4J248 108 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 ISLRO14498 428 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 ZNF253O75346 499 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 HLA-DMBP28068 263 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 PSMB3P49720 205 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 CCL20P78556 96 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 ODF3L2Q3SX64 289 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 PCNPQ8WW12 178 aaKnown RBP12.13□□□□□ -0.47
LSM1-204ENST00000522515 SLC50A1Q9BRV3 221 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 TMEM167BQ9NRX6 74 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 SORL1Q92673 2214 aa12.13□□□□□ -0.47
LSM1-204ENST00000522515 ID1P41134 155 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 CD81P60033 236 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 RANP62826 216 aaKnown RBP12.12□□□□□ -0.47
LSM1-204ENST00000522515 BLOC1S1P78537 153 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 KPRPQ5T749 579 aaPredicted RBP12.12□□□□□ -0.47
LSM1-204ENST00000522515 SAMD13Q5VXD3 122 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 EXOC3-AS1Q8N2X6 119 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 C20orf173Q96LM9 149 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 MAP6D1Q9H9H5 199 aa12.12□□□□□ -0.47
LSM1-204ENST00000522515 ZMAT5Q9UDW3 170 aaKnown RBP12.12□□□□□ -0.47
LSM1-204ENST00000522515 DEFB131AP59861 70 aa12.11□□□□□ -0.47
LSM1-204ENST00000522515 SNRPD3P62318 126 aaKnown RBP12.11□□□□□ -0.47
LSM1-204ENST00000522515 PSMG4Q5JS54 123 aa12.11□□□□□ -0.47
LSM1-204ENST00000522515 GTSCR1Q86UQ5 136 aa12.11□□□□□ -0.47
LSM1-204ENST00000522515 LINC00052Q96N35 136 aa12.11□□□□□ -0.47
LSM1-204ENST00000522515 C19orf73Q9NVV2 129 aa12.11□□□□□ -0.47
LSM1-204ENST00000522515 HBE1P02100 147 aa12.1□□□□□ -0.47
LSM1-204ENST00000522515 PSG9Q00887 426 aa12.1□□□□□ -0.47
LSM1-204ENST00000522515 NOTCH1P46531 2555 aa12.1□□□□□ -0.47
LSM1-204ENST00000522515 NBEAL1Q6ZS30 2694 aa12.1□□□□□ -0.47
LSM1-204ENST00000522515 TEX46H3BTG2 121 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 PRB4P10163 310 aaPredicted RBP12.09□□□□□ -0.47
LSM1-204ENST00000522515 DEFB1P60022 68 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 UBE2G2P60604 165 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 ICAM4Q14773 271 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 ZNF124Q15973 351 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 PSG3Q16557 428 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 APRG1Q8IVJ8 170 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 Q8N1Y9 231 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 WFDC10AQ9H1F0 79 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 Q9H3A6 140 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 OR11H12B2RN74 326 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 M0R3E3 92 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 NMBP08949 121 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 ZNF767PQ75MW2 155 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 LYPD1Q8N2G4 141 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 LYPD6BQ8NI32 183 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 FAM110AQ9BQ89 295 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 AAMDCQ9H7C9 122 aa12.09□□□□□ -0.47
LSM1-204ENST00000522515 YTHDF2Q9Y5A9 579 aaKnown RBP12.09□□□□□ -0.47
LSM1-204ENST00000522515 PGPA6NDG6 321 aa12.08□□□□□ -0.48
LSM1-204ENST00000522515 ZNF705FA8MVS1 300 aaPredicted RBP12.08□□□□□ -0.48
LSM1-204ENST00000522515 PRB2P02812 416 aaPredicted RBP12.08□□□□□ -0.48
LSM1-204ENST00000522515 OTORQ9NRC9 128 aa12.08□□□□□ -0.48
LSM1-204ENST00000522515 A0A1W2PRE2 83 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 FAM74A7A6NL05 159 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 GGTLC3B5MD39 225 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 PAGE4O60829 102 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 CMC4P56277 68 aaPredicted RBP12.07□□□□□ -0.48
LSM1-204ENST00000522515 SUMO1P63165 101 aaKnown RBP12.07□□□□□ -0.48
LSM1-204ENST00000522515 DEFB125Q8N687 156 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms