RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SFTPDP35247 375 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 VDAC2P45880 294 aaPredicted RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 FUT6P51993 359 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 MZT1Q08AG7 82 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 TBC1D28Q2M2D7 210 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 CXorf66Q5JRM2 361 aaPredicted RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 TEX36Q5VZQ5 186 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 FRG2Q64ET8 278 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 HOGA1Q86XE5 327 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 MEX3DQ86XN8 651 aaKnown RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 KIR3DL3Q8N743 410 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 C3orf56Q8N813 242 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 TMEM116Q8NCL8 245 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 OR5D14Q8NGL3 314 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 RTN4IP1Q8WWV3 396 aaPredicted RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 RPEQ96AT9 228 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 C10orf35Q96D05 121 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 OR2H1Q9GZK4 316 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 SCRT2Q9NQ03 307 aa4.35□□□□□ -1.71
NUP54-218ENST00000515460 YTHDF2Q9Y5A9 579 aaKnown RBP4.35□□□□□ -1.71
NUP54-218ENST00000515460 PHF3Q92576 2039 aaKnown RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 ZNF407Q9C0G0 2248 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 A0A1B0GUV1 79 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 OR4C46A6NHA9 309 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 J3QLW9 94 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 SH2D1BO14796 132 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 FFAR1O14842 300 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 CRXO43186 299 aaPredicted RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 ANGPTL7O43827 346 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 CPSF4O95639 269 aaKnown RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 CD55P08174 381 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 SCTP09683 121 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 COX8AP10176 69 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 AQP1P29972 269 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 XGP55808 180 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 HSPE1P61604 102 aaKnown RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 RPS11P62280 158 aaKnown RBP eCLIP4.34□□□□□ -1.71
NUP54-218ENST00000515460 CCL20P78556 96 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 TGFBR3Q03167 851 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 HES1Q14469 280 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 TPRX1Q8N7U7 411 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 OR51H1Q8NH63 302 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 RNF128Q8TEB7 428 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 TMEM101Q96IK0 257 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 GFI1Q99684 422 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 HSD17B10Q99714 261 aaKnown RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 GNB1LQ9BYB4 327 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 PARP12Q9H0J9 701 aaKnown RBP4.34□□□□□ -1.71
NUP54-218ENST00000515460 ELOVL3Q9HB03 270 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 IDI2-AS1Q9NZ38 188 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 KIAA1549Q9HCM3 1950 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 HEATR5AQ86XA9 2040 aa4.34□□□□□ -1.71
NUP54-218ENST00000515460 ROS1P08922 2347 aa4.34□□□□□ -1.72
NUP54-218ENST00000515460 FRAS1Q86XX4 4008 aa4.34□□□□□ -1.72
NUP54-218ENST00000515460 A0A0U1RRA0 63 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 A0A1W2PS18 150 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 C5orf49A4QMS7 147 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 GGTLC3B5MD39 225 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 NPFFO15130 113 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 APOMO95445 188 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 IGKV1D-16P01601 117 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 SMIM13P0DJ93 91 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 CAMPP49913 170 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 RPS4XP62701 263 aaKnown RBP4.33□□□□□ -1.72
NUP54-218ENST00000515460 CX3CL1P78423 397 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 CLEC12BQ2HXU8 276 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 TSPO2Q5TGU0 170 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 MFSD12Q6NUT3 480 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 SLC25A47Q6Q0C1 308 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 RASL11AQ6T310 242 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 TMEM136Q6ZRR5 245 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 SPATA12Q7Z6I5 190 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 MARCH3Q86UD3 253 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 APRG1Q8IVJ8 170 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 ZNF695Q8IW36 515 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 ZNF433Q8N7K0 673 aaPredicted RBP4.33□□□□□ -1.72
NUP54-218ENST00000515460 TMEM99Q8N816 258 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 OR10G8Q8NGN5 311 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 OR9G1Q8NH87 305 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 PPDPFLQ8WWR9 84 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 ST6GALNAC6Q969X2 333 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 MCHR1Q99705 422 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 SRSF8Q9BRL6 282 aaKnown RBP4.33□□□□□ -1.72
NUP54-218ENST00000515460 TMEM70Q9BUB7 260 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 CLEC7AQ9BXN2 247 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 SH3BGRL3Q9H299 93 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 NAA60Q9H7X0 242 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 GNG13Q9P2W3 67 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 TMED7Q9Y3B3 224 aa4.33□□□□□ -1.72
NUP54-218ENST00000515460 IGLV3-32A0A0A0MS00 114 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 A0A0B4J2E0 115 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 TRBV5-5A0A0J9YX44 114 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 MDFIC2A0A1B0GVS7 189 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 A0A1B0GX12 115 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 GRIFINA4D1Z8 144 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 K7EN84 100 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 SLC17A2O00624 439 aa4.32□□□□□ -1.72
NUP54-218ENST00000515460 PIN1P1O15428 100 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms