RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 FUT9Q9Y231 359 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 STAB2Q8WWQ8 2551 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 A0A0D9SG52 128 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 H3BMM0 161 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 MBP02144 154 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 HIST1H1EP10412 219 aaKnown RBP10.5□□□□□ -0.73
NUP54-216ENST00000514901 HLA-DRB4P13762 266 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 M6PRP20645 277 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 TAS2R45P59539 299 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 NUTF2P61970 127 aaKnown RBP10.5□□□□□ -0.73
NUP54-216ENST00000514901 TCTE3Q8IZS6 198 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 HSD17B11Q8NBQ5 300 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 OR2G3Q8NGZ4 309 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 ST6GAL2Q96JF0 529 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 CLUHP3Q96NS8 147 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 SAV1Q9H4B6 383 aaPredicted RBP10.5□□□□□ -0.73
NUP54-216ENST00000514901 TP53TG1Q9Y2A0 90 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 HLA-DRB4X5D2U9 266 aa10.5□□□□□ -0.73
NUP54-216ENST00000514901 TRAV8-2A0A0B4J237 113 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 ZNF253O75346 499 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 ATP6V0CP27449 155 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 PDE6HQ13956 83 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 PSG3Q16557 428 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 RPL7L1Q6DKI1 246 aaKnown RBP10.49□□□□□ -0.73
NUP54-216ENST00000514901 MIR17HGQ75NE6 70 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 KCNRGQ8N5I3 272 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 FAM167A-AS1Q96KT0 104 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 C20orf173Q96LM9 149 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 SLC25A2Q9BXI2 301 aa10.49□□□□□ -0.73
NUP54-216ENST00000514901 ZNF331Q9NQX6 463 aaPredicted RBP10.49□□□□□ -0.73
NUP54-216ENST00000514901 A0A1W2PPV4 95 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 H3BQ15 152 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 SPRY2O43597 315 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 OR11H4Q8NGC9 324 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 SAT2Q96F10 170 aaPredicted RBP10.48□□□□□ -0.73
NUP54-216ENST00000514901 ARPC5LQ9BPX5 153 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 PAXXQ9BUH6 204 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 OR51M1Q9H341 326 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 ZNF586Q9NXT0 402 aa10.48□□□□□ -0.73
NUP54-216ENST00000514901 TENM3Q9P273 2699 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 TRBV19A0A075B6N1 114 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 A0A0J9YX75 114 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 DUSP14O95147 198 aaKnown RBP10.47□□□□□ -0.73
NUP54-216ENST00000514901 CA1P00915 261 aaPredicted RBP10.47□□□□□ -0.73
NUP54-216ENST00000514901 PSG9Q00887 426 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 KHDC3LQ587J8 217 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 IGFL4Q6B9Z1 124 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 ZNF738Q8NE65 137 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 OR10G4Q8NGN3 311 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 OR10G9Q8NGN4 311 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 OR10G7Q8NGN6 311 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 RNF183Q96D59 192 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 OVOL2Q9BRP0 275 aa10.47□□□□□ -0.73
NUP54-216ENST00000514901 NBEAP1P0C6P0 100 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 AKAP14Q86UN6 197 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 RNF182Q8N6D2 247 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 RNF141Q8WVD5 230 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 C1QTNF4Q9BXJ3 329 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 CYTL1Q9NRR1 136 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 PRELID1Q9Y255 219 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 RFNGQ9Y644 331 aa10.46□□□□□ -0.73
NUP54-216ENST00000514901 hCG_2014768A0A024R1R8 64 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 KANTRA0A1W2PQU2 76 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 OR7C2O60412 319 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 SNRPCP09234 159 aaKnown RBP10.45□□□□□ -0.74
NUP54-216ENST00000514901 PYYP10082 97 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 RAB2AP61019 212 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 EIF5AP63241 154 aaKnown RBP10.45□□□□□ -0.74
NUP54-216ENST00000514901 DEFB135Q30KP9 77 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 GDF5OSQ5U4N7 250 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 PQLC2Q6ZP29 291 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 OR4B1Q8NGF8 309 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 RPUSD4Q96CM3 377 aaKnown RBP10.45□□□□□ -0.74
NUP54-216ENST00000514901 FXYD5Q96DB9 178 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 MRPL53Q96EL3 112 aaKnown RBP10.45□□□□□ -0.74
NUP54-216ENST00000514901 WWC2-AS2Q96NR7 200 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 RETNQ9HD89 108 aa10.45□□□□□ -0.74
NUP54-216ENST00000514901 A8MTW9 85 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 F6UB75 175 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 H3BTX0 84 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 SLC17A3O00476 420 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 C1QBP02746 253 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
NUP54-216ENST00000514901 CDC34P49427 236 aaPredicted RBP10.44□□□□□ -0.74
NUP54-216ENST00000514901 DEFB1P60022 68 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 FAM122CQ6P4D5 195 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 OR8A1Q8NGG7 326 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 BLNKQ8WV28 456 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 HYLS1Q96M11 299 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 ACTR3CQ9C0K3 210 aaPredicted RBP10.44□□□□□ -0.74
NUP54-216ENST00000514901 SH3BGRL3Q9H299 93 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 AAMDCQ9H7C9 122 aa10.44□□□□□ -0.74
NUP54-216ENST00000514901 BCL2L11O43521 198 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 NDUFB4O95168 129 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 OR10J4P0C629 311 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 HLA-DMBP28068 263 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 AKR1C8PQ5T2L2 129 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 TMUB2Q71RG4 321 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 LYPD1Q8N2G4 141 aa10.43□□□□□ -0.74
NUP54-216ENST00000514901 RPP25LQ8N5L8 163 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms