RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SIPA1L3O60292 1781 aaPredicted RBP1.52□□□□□ -2.17
USP53-204ENST00000507906 PEAK1Q9H792 1746 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 COL4A5P29400 1685 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 PIK3C2BO00750 1634 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 ALKQ9UM73 1620 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TULP4Q9NRJ4 1543 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 HEATR5AQ86XA9 2040 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 A0A0D9SG52 128 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TRBV6-5A0A0K0K1A5 114 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TMEM256-PLSCR3K7ERE1 68 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 CST8O60676 142 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TCL1BO95988 128 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 IFNA7P01567 189 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 CSN2P05814 226 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 S100A1P23297 94 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 PHBP35232 272 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 SPCS2Q15005 226 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 ELOBQ15370 118 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 CCDC153Q494R4 210 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 RNASE10Q5GAN6 216 aaKnown RBP1.51□□□□□ -2.17
USP53-204ENST00000507906 MMGT1Q8N4V1 131 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 NAT14Q8WUY8 206 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TMEM126AQ9H061 195 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 PCTPQ9UKL6 214 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 EPDR1Q9UM22 224 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 DOCK1Q14185 1865 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 FOCADQ5VW36 1801 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 UBR2Q8IWV8 1755 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 NUP188Q5SRE5 1749 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 PKD1L3Q7Z443 1732 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 TIAM2Q8IVF5 1701 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 LRP5O75197 1615 aa1.51□□□□□ -2.17
USP53-204ENST00000507906 CPS1P31327 1500 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 ZFC3H1O60293 1989 aaKnown RBP1.5□□□□□ -2.17
USP53-204ENST00000507906 NSD3Q9BZ95 1437 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 ANKRD31Q8N7Z5 1873 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 COL11A1P12107 1806 aaPredicted RBP1.5□□□□□ -2.17
USP53-204ENST00000507906 SCN11AQ9UI33 1791 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 PFDN1O60925 122 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 MGST1P10620 155 aaKnown RBP1.5□□□□□ -2.17
USP53-204ENST00000507906 GLRXP35754 106 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 AKR1C3P42330 323 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 SSR2P43308 183 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 B2MP61769 119 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 DYNLT1P63172 113 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 BRMS1LQ5PSV4 323 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 STX12Q86Y82 276 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 Q8IYB0 196 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 LYSMD1Q96S90 227 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 SH3BGRL3Q9H299 93 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 TRABDQ9H4I3 376 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 LYRM2Q9NU23 88 aaPredicted RBP1.5□□□□□ -2.17
USP53-204ENST00000507906 SCN7AQ01118 1682 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 USP54Q70EL1 1684 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 LMO7Q8WWI1 1683 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 RREB1Q92766 1687 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 ALS2Q96Q42 1657 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 ARHGAP5Q13017 1502 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 MRC1P22897 1456 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 ARFGEF1Q9Y6D6 1849 aa1.5□□□□□ -2.17
USP53-204ENST00000507906 RGPD3A6NKT7 1758 aaPredicted RBP1.49□□□□□ -2.17
USP53-204ENST00000507906 RGPD2P0DJD1 1756 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 RGPD4Q7Z3J3 1758 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 TJP1Q07157 1748 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 UBR1Q8IWV7 1749 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 RFX7Q2KHR2 1363 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 CCDC88CQ9P219 2028 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 C5P01031 1676 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 C2orf70A6NJV1 201 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 H7C1C5 153 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 J3QKU1 62 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 PGRMC1O00264 195 aaKnown RBP1.49□□□□□ -2.17
USP53-204ENST00000507906 GPX1P07203 203 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 LCN6P62502 163 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 MYL5Q02045 173 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 DEFB113Q30KQ7 82 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 TRIQKQ629K1 86 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 C3orf33Q6P1S2 294 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 Q8N2B8 174 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 OR4D11Q8NGI4 311 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 ZNF563Q8TA94 476 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 PRADC1Q9BSG0 188 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 MRPL32Q9BYC8 188 aaKnown RBP1.49□□□□□ -2.17
USP53-204ENST00000507906 IMUPQ9GZP8 106 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 BOLA2Q9H3K6 86 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 BCL2L10Q9HD36 194 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 SLC35A3Q9Y2D2 325 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 BAZ2BQ9UIF8 2168 aaKnown RBP1.49□□□□□ -2.17
USP53-204ENST00000507906 BTAF1O14981 1849 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 PHIPQ8WWQ0 1821 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 PTPRMP28827 1452 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 C1orf167Q5SNV9 1468 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 PHLPP1O60346 1717 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 TOGARAM1Q9Y4F4 1720 aa1.49□□□□□ -2.17
USP53-204ENST00000507906 TOPAZ1Q8N9V7 1692 aa1.48□□□□□ -2.17
USP53-204ENST00000507906 ARHGEF10O15013 1369 aa1.48□□□□□ -2.17
USP53-204ENST00000507906 MED23Q9ULK4 1368 aa1.48□□□□□ -2.17
USP53-204ENST00000507906 ERCC6L2Q5T890 1561 aa1.48□□□□□ -2.17
USP53-204ENST00000507906 MDC1Q14676 2089 aaKnown RBP1.48□□□□□ -2.17
USP53-204ENST00000507906 TRGV2A0A075B6R0 118 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms