RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SEPSECSQ9HD40 501 aaKnown RBP11.53□□□□□ -0.56
VIM-208ENST00000497849 LINC00588Q9Y4M8 146 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 A0A0D9SG52 128 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 LOC102723971A0A1B0GUV8 181 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 IGKV1-17P01599 117 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 IGKV3-20P01619 116 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 CXCL2P19875 107 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 RPL12P30050 165 aaKnown RBP11.52□□□□□ -0.57
VIM-208ENST00000497849 AP2S1P53680 142 aaPredicted RBP11.52□□□□□ -0.57
VIM-208ENST00000497849 XGP55808 180 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 TAS2R30P59541 319 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 RAB11AP62491 216 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 ARL16Q0P5N6 197 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 OR8G2PQ6IF36 304 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 ZNF709Q8N972 641 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 RNASEH2CQ8TDP1 164 aaKnown RBP11.52□□□□□ -0.57
VIM-208ENST00000497849 AQP10Q96PS8 301 aa11.52□□□□□ -0.57
VIM-208ENST00000497849 RNF222A6NCQ9 220 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 PMS2P5A8MQ11 134 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 BTF3P20290 206 aaKnown RBP11.51□□□□□ -0.57
VIM-208ENST00000497849 CAV2P51636 162 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 RPP30P78346 268 aaKnown RBP11.51□□□□□ -0.57
VIM-208ENST00000497849 ZNF345Q14585 488 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 TIGITQ495A1 244 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 TMEM14EPQ6UXP3 125 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 C1orf158Q8N1D5 194 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 KCNRGQ8N5I3 272 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 SLC25A31Q9H0C2 315 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 NRN1Q9NPD7 142 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 LYRM2Q9NU23 88 aaPredicted RBP11.51□□□□□ -0.57
VIM-208ENST00000497849 BOLA1Q9Y3E2 137 aa11.51□□□□□ -0.57
VIM-208ENST00000497849 IGSF23A1L1A6 192 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 PRSS46E5RG02 174 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 CORTO00230 105 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 TSC22D2O75157 780 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 CST7O76096 145 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 HBE1P02100 147 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 S100A11P31949 105 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 RND2P52198 227 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 ATP5IP56385 69 aaPredicted RBP11.5□□□□□ -0.57
VIM-208ENST00000497849 TMUB2Q71RG4 321 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 OR4X1Q8NH49 305 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 NPIPB3Q92617 1050 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 ACY3Q96HD9 319 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 ARL6Q9H0F7 186 aa11.5□□□□□ -0.57
VIM-208ENST00000497849 RPS10-NUDT3A0A1W2PQS6 291 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 NUDT3O95989 172 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 CCL18P55774 89 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 TMEM252Q8N6L7 170 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 C18orf15Q96N68 181 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 SLC35B3Q9H1N7 401 aa11.49□□□□□ -0.57
VIM-208ENST00000497849 KANTRA0A1W2PQU2 76 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 GPX4P36969 197 aaPredicted RBP11.48□□□□□ -0.57
VIM-208ENST00000497849 BAXQ07812 192 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 GAMTQ14353 236 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 OPCMLQ14982 345 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 STX12Q86Y82 276 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 SAV1Q9H4B6 383 aaPredicted RBP11.48□□□□□ -0.57
VIM-208ENST00000497849 Q9H8V8 135 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 GOLT1BQ9Y3E0 138 aa11.48□□□□□ -0.57
VIM-208ENST00000497849 BCL2L11O43521 198 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 NHLH2Q02577 135 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 USF2Q15853 346 aaPredicted RBP11.47□□□□□ -0.57
VIM-208ENST00000497849 RRN3P1Q2M238 152 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 ETFRF1Q6IPR1 90 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 SIGLEC15Q6ZMC9 328 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 SLC35E1Q96K37 410 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 CLUHP3Q96NS8 147 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 ARPC5LQ9BPX5 153 aa11.47□□□□□ -0.57
VIM-208ENST00000497849 SMCO3A2RU48 225 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 BUB3O43684 328 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 SULT1A1P50225 295 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 SSX7Q7RTT5 188 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 OR10P1Q8NGE3 313 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 FRZBQ92765 325 aa11.46□□□□□ -0.57
VIM-208ENST00000497849 HMCN2Q8NDA2 5059 aa11.46□□□□□ -0.58
VIM-208ENST00000497849 IGKV1D-37A0A075B6S9 117 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 TRAV30A0A087WSZ9 112 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 TAAR5O14804 337 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 IGLC1P0CG04 106 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 OR10J1P30954 320 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 FUSP35637 526 aaKnown RBP eCLIP11.45□□□□□ -0.58
VIM-208ENST00000497849 DLK1P80370 383 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 SLC38A11Q08AI6 406 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 FOXI2Q6ZQN5 318 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 OR4B1Q8NGF8 309 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 SMIM3Q9BZL3 60 aa11.45□□□□□ -0.58
VIM-208ENST00000497849 F5H768 121 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 SCGB2A1O75556 95 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 PRM2P04554 102 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 HBG1P69891 147 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 HBG2P69892 147 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 SLC51BQ86UW2 128 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 OR1S2Q8NGQ3 325 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 Q8WTZ3 238 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 RNF141Q8WVD5 230 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 Q9H3A6 140 aa11.44□□□□□ -0.58
VIM-208ENST00000497849 IGKV1OR2-108A0A075B7D4 117 aa11.43□□□□□ -0.58
VIM-208ENST00000497849 IL4P05112 153 aa11.43□□□□□ -0.58
VIM-208ENST00000497849 DEFB130BP0DP73 79 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms