RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 Q6ZTI0 123 aa9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 NTN5Q8WTR8 489 aaPredicted RBP9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 C15orf40Q8WUR7 153 aa9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 YIPF6Q96EC8 236 aa9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 LINC00467Q9BRT7 94 aa9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 ICOSQ9Y6W8 199 aa9.65□□□□□ -0.86
PRPF40A-211ENST00000493468 GATA2P23769 480 aaPredicted RBP9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 SSBP1Q04837 148 aaKnown RBP9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 TMEM182Q6ZP80 229 aaPredicted RBP9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 DEFB104AQ8WTQ1 72 aa9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 RPUSD4Q96CM3 377 aaKnown RBP9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 MSRB1Q9NZV6 116 aa9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 KCNIP3Q9Y2W7 256 aa9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 LRP1Q07954 4544 aaKnown RBP9.64□□□□□ -0.87
PRPF40A-211ENST00000493468 IGLV5-52A0A0A0MRZ9 124 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 FAM25AB3EWG3 89 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 FAM25CB3EWG5 89 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 FAM25GB3EWG6 89 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 CXCL2P19875 107 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 KIR3DS1Q14943 382 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 PYGO2Q9BRQ0 406 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 HIGD1AQ9Y241 93 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 LY96Q9Y6Y9 160 aa9.63□□□□□ -0.87
PRPF40A-211ENST00000493468 TRGV2A0A075B6R0 118 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 DISC1C4P0D8 188 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 NPIPB6E9PJ23 425 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 PITX3O75364 302 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 C1QBP02746 253 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 PLP1P60201 277 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 RAP2BP61225 183 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 SRPXP78539 464 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 FAAP20Q6NZ36 180 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 ACOT7LQ6ZUV0 252 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 LYZL2Q7Z4W2 148 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 LRRC20Q8TCA0 184 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 PRR13Q9NZ81 148 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 EXTL2Q9UBQ6 330 aa9.62□□□□□ -0.87
PRPF40A-211ENST00000493468 PIGBOS1A0A0B4J2F0 54 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 ZNF324O75467 553 aaPredicted RBP9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 MZT2AQ6P582 158 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 LYPD5Q6UWN5 251 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 S100A7AQ86SG5 101 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 ZNF680Q8NEM1 530 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 ODF3Q96PU9 254 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 CIB3Q96Q77 187 aaPredicted RBP9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 PRRT1Q99946 306 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 RNF24Q9Y225 148 aa9.61□□□□□ -0.87
PRPF40A-211ENST00000493468 FAT3Q8TDW7 4589 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 DUXBA0A1W2PPF3 345 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 MRPS12O15235 138 aaKnown RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 PAX4O43316 350 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 HYPMO75409 117 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 IAPPP10997 89 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 RPP30P78346 268 aaKnown RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 MRPS10P82664 201 aaKnown RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 AKR1C1Q04828 323 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 LCN15Q6UWW0 184 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 C11orf72Q8NBR9 251 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 SLC50A1Q9BRV3 221 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 PARD6GQ9BYG4 376 aaPredicted RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 ZNF331Q9NQX6 463 aaPredicted RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 PAIP2BQ9ULR5 123 aaKnown RBP9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 PLA2G2DQ9UNK4 145 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 FUT9Q9Y231 359 aa9.6□□□□□ -0.87
PRPF40A-211ENST00000493468 LRCOL1A6NCL2 159 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 MED6O75586 246 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 SLC25A6P12236 298 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 EVI2AP22794 236 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 NCS1P62166 190 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 SLAQ13239 276 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 C4orf46Q504U0 113 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 CYP2G1PQ6ZSU1 146 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 CCDC190Q86UF4 302 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 AP3S1Q92572 193 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 ST6GAL2Q96JF0 529 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 PRO0255Q9UI72 69 aa9.59□□□□□ -0.87
PRPF40A-211ENST00000493468 IL5P05113 134 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 AKAIN1P0CW23 69 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 ANXA3P12429 323 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 LEPP41159 167 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 SELENOTP62341 195 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 MRPL23Q16540 153 aaKnown RBP9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 C10orf126Q8N4M7 172 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 SCGB3A2Q96PL1 93 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 FAM30AQ9NZY2 134 aa9.58□□□□□ -0.88
PRPF40A-211ENST00000493468 TRGV1A0A0A0MS02 117 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 TRAV12-3A0A0B4J271 114 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 PMS2P5A8MQ11 134 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 SPINK4O60575 86 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 LINC00869P0C866 280 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 PRB4P10163 310 aaPredicted RBP9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 VBP1P61758 197 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 Q6ZSA8 131 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 NEGR1Q7Z3B1 354 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 LINC00528Q8N1L1 170 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 OR51S1Q8NGJ8 323 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 SMIM4Q8WVI0 70 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 VCX3AQ9NNX9 186 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 GSN-AS1Q9NRJ2 163 aa9.57□□□□□ -0.88
PRPF40A-211ENST00000493468 OXTP01178 125 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms