RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 A0A0D9SEW6 157 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 TRBV10-2A0A0K0K1G8 114 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 E7EQ34 232 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 NFYBP25208 207 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM128Q5BJH2 165 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 CROCCP2Q86T23 111 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 OR5A1Q8NGJ0 315 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 PFN4Q8NHR9 129 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 C11orf40Q8WZ69 217 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 C20orf166-AS1Q96NR2 134 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 HIST1H2BLQ99880 126 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 EFCAB11Q9BUY7 163 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 NDUFB11Q9NX14 153 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 PLIN4Q96Q06 1357 aa2.43□□□□□ -2.02
VPS13A-212ENST00000493341 IGHV3-64A0A075B6Q5 118 aa2.43□□□□□ -2.02
VPS13A-212ENST00000493341 HSPB11Q9Y547 144 aa2.43□□□□□ -2.02
VPS13A-212ENST00000493341 LTBP2Q14767 1821 aa2.43□□□□□ -2.02
VPS13A-212ENST00000493341 TMSB15BA0A087X1C1 80 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 MUC21A0A0G2JKD1 596 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 MUC21A0A140T8X8 626 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 A0A1W2PNU3 283 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-212ENST00000493341 ST6GALNAC3Q8NDV1 305 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 DCANP1Q8TF63 244 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 ADAT3Q96EY9 351 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-212ENST00000493341 CCDC32Q9BV29 185 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 MYO16Q9Y6X6 1858 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 HTTP42858 3142 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 MYH6P13533 1939 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 FUOMA2VDF0 154 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 PRORSD1PA6NEY8 169 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 P0C880 135 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 OGNP20774 298 aaKnown RBP2.42□□□□□ -2.02
VPS13A-212ENST00000493341 PEBP1P30086 187 aaKnown RBP2.42□□□□□ -2.02
VPS13A-212ENST00000493341 FXYD2P54710 66 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 IFT20Q8IY31 132 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 C10orf126Q8N4M7 172 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 WFDC11Q8NEX6 87 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 OR4E2Q8NGC2 313 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 DNAJC30Q96LL9 226 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 Q9BRP9 147 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 OR52A1Q9UKL2 312 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 GINS2Q9Y248 185 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 MALRD1Q5VYJ5 2156 aa2.42□□□□□ -2.02
VPS13A-212ENST00000493341 KIAA2026Q5HYC2 2103 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 KIAA0100Q14667 2235 aaKnown RBP2.41□□□□□ -2.02
VPS13A-212ENST00000493341 PDE4DIPQ5VU43 2346 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 SPRR5A0A1B0GTR4 108 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM212A6NML5 194 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 HMSDA8MTL9 139 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TCL1BO95988 128 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 IFNA14P01570 189 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TRGC2P03986 189 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TRGC1P0CF51 173 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 AQP4P55087 323 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 LCN15Q6UWW0 184 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 LRRC28Q86X40 367 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-212ENST00000493341 LYPD1Q8N2G4 141 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 SKA2Q8WVK7 121 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-212ENST00000493341 GPX7Q96SL4 187 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-212ENST00000493341 MCM3APO60318 1980 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM256-PLSCR3K7ERE1 68 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 M0R378 163 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 OR2T1O43869 369 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 CRYGAP11844 174 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 INSL3P51460 131 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 UBE2BP63146 152 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 ZNF791Q3KP31 576 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-212ENST00000493341 AAED1Q7RTV5 226 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM86AQ8N2M4 240 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 C12orf29Q8N999 325 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 DOHHQ9BU89 302 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 PRO3102Q9H379 93 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 ASB4Q9Y574 426 aa2.41□□□□□ -2.02
VPS13A-212ENST00000493341 A0A0D9SG52 128 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 C3orf84H3BNL1 204 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 J3QQQ9 107 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 GGCTO75223 188 aaKnown RBP2.4□□□□□ -2.03
VPS13A-212ENST00000493341 HTR1AP08908 422 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 RPL26P61254 145 aaKnown RBP2.4□□□□□ -2.03
VPS13A-212ENST00000493341 SLC38A11Q08AI6 406 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 SS18Q15532 418 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 NDUFA5Q16718 116 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 AIF1LQ9BQI0 150 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 EPDR1Q9UM22 224 aa2.4□□□□□ -2.03
VPS13A-212ENST00000493341 RPL26L1Q9UNX3 145 aaKnown RBP2.4□□□□□ -2.03
VPS13A-212ENST00000493341 MEIS3P1A6NDR6 274 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 C19orf84I3L1E1 186 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 PGLYRP1O75594 196 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-212ENST00000493341 RAB4BP61018 213 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 SARNPP82979 210 aaKnown RBP2.39□□□□□ -2.03
VPS13A-212ENST00000493341 TAF9Q16594 264 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 KRTAP5-1Q6L8H4 278 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 TOMM20LQ6UXN7 152 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 NUP35Q8NFH5 326 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 TANC1Q9C0D5 1861 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 ODAMA1E959 279 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 ARRDC5A6NEK1 342 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 RNASE4P34096 147 aaKnown RBP2.39□□□□□ -2.03
VPS13A-212ENST00000493341 RHOGP84095 191 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms