RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 C17orf77Q96MU5 243 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 ASCL2Q99929 193 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 ZNF471Q9BX82 626 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-210ENST00000489961 SLC25A2Q9BXI2 301 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 SH3BGRL3Q9H299 93 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 CYTL1Q9NRR1 136 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 RPRMQ9NS64 109 aa8.05□□□□□ -1.12
VPS13D-210ENST00000489961 OR7C2O60412 319 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 PYYP10082 97 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 HIST1H1EP10412 219 aaKnown RBP8.04□□□□□ -1.12
VPS13D-210ENST00000489961 RPL35AP18077 110 aaKnown RBP8.04□□□□□ -1.12
VPS13D-210ENST00000489961 CDC34P49427 236 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-210ENST00000489961 HAGHQ16775 308 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 ZFP69Q49AA0 526 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 TMEM41BQ5BJD5 291 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 ACTL10Q5JWF8 245 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 EBLN2Q6P2I7 272 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 FAM167A-AS1Q96KT0 104 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 PAXXQ9BUH6 204 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 OR51M1Q9H341 326 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 ZNF331Q9NQX6 463 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-210ENST00000489961 CLEC5AQ9NY25 188 aa8.04□□□□□ -1.12
VPS13D-210ENST00000489961 TRAV8-2A0A0B4J237 113 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 KIR2DL5BA0A0G2JN68 375 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 KIR2DL5BA0A0G2JPC4 375 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 KNCNA6PVL3 124 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 H3BQ15 152 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 H3BTX0 84 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 ZNF253O75346 499 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 SNRPCP09234 159 aaKnown RBP8.03□□□□□ -1.12
VPS13D-210ENST00000489961 SPP1P10451 314 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 C4BPBP20851 252 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 PDE6HQ13956 83 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 PSG3Q16557 428 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 LGALSLQ3ZCW2 172 aaPredicted RBP8.03□□□□□ -1.12
VPS13D-210ENST00000489961 AKR1C8PQ5T2L2 129 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 FOXI2Q6ZQN5 318 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 KIR2DL5AQ8N109 375 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 ZNF738Q8NE65 137 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 KIR2DL5BQ8NHK3 375 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 C20orf173Q96LM9 149 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 ACTR3CQ9C0K3 210 aaPredicted RBP8.03□□□□□ -1.12
VPS13D-210ENST00000489961 SAV1Q9H4B6 383 aaPredicted RBP8.03□□□□□ -1.12
VPS13D-210ENST00000489961 ZMAT4Q9H898 229 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 ZNF586Q9NXT0 402 aa8.03□□□□□ -1.12
VPS13D-210ENST00000489961 TRBV19A0A075B6N1 114 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 SLC17A3O00476 420 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 UBE2CO00762 179 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 OR10J4P0C629 311 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 NBEAP1P0C6P0 100 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 TPT1P13693 172 aaKnown RBP8.02□□□□□ -1.13
VPS13D-210ENST00000489961 HLA-DRB4P13762 266 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 UBE2L3P68036 154 aaKnown RBP8.02□□□□□ -1.13
VPS13D-210ENST00000489961 PSG9Q00887 426 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 CD300CQ08708 224 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 IGFL4Q6B9Z1 124 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 PQLC2Q6ZP29 291 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 TRPT1Q86TN4 253 aaKnown RBP8.02□□□□□ -1.13
VPS13D-210ENST00000489961 RPP25LQ8N5L8 163 aaKnown RBP8.02□□□□□ -1.13
VPS13D-210ENST00000489961 RNF182Q8N6D2 247 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 BLNKQ8WV28 456 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 RNF141Q8WVD5 230 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 SAT2Q96F10 170 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-210ENST00000489961 SPATA25Q9BR10 227 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 CSTL1Q9H114 145 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 HLA-DRB4X5D2U9 266 aa8.02□□□□□ -1.13
VPS13D-210ENST00000489961 A0A0J9YX75 114 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 H3BMM0 161 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 SEC11BP0C7V7 166 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 HLA-DMBP28068 263 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 NUTF2P61970 127 aaKnown RBP8.01□□□□□ -1.13
VPS13D-210ENST00000489961 MORN3Q6PF18 240 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-210ENST00000489961 BAP18Q8IXM2 172 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 RAB24Q969Q5 203 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 FXYD5Q96DB9 178 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 TM2D3Q9BRN9 247 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 AAMDCQ9H7C9 122 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 PRELID1Q9Y255 219 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 AGRNO00468 2067 aa8.01□□□□□ -1.13
VPS13D-210ENST00000489961 F6UB75 175 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 HMGB3O15347 200 aaKnown RBP8□□□□□ -1.13
VPS13D-210ENST00000489961 EIF3GO75821 320 aaKnown RBP eCLIP8□□□□□ -1.13
VPS13D-210ENST00000489961 DUSP14O95147 198 aaKnown RBP8□□□□□ -1.13
VPS13D-210ENST00000489961 NDUFB4O95168 129 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 STAG3L2P0CL84 134 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 STAG3L3P0CL85 134 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 DEFB1P60022 68 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 GDF5OSQ5U4N7 250 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 EIF5AL1Q6IS14 154 aaKnown RBP8□□□□□ -1.13
VPS13D-210ENST00000489961 Q6ZWC4 215 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 OR4B1Q8NGF8 309 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 STOML3Q8TAV4 291 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 RPUSD4Q96CM3 377 aaKnown RBP8□□□□□ -1.13
VPS13D-210ENST00000489961 ZNF503Q96F45 646 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 CLUHP3Q96NS8 147 aa8□□□□□ -1.13
VPS13D-210ENST00000489961 CTXND1A0A1B0GTU2 59 aa7.99□□□□□ -1.13
VPS13D-210ENST00000489961 UMAD1C9J7I0 102 aa7.99□□□□□ -1.13
VPS13D-210ENST00000489961 CXorf1O96002 111 aa7.99□□□□□ -1.13
VPS13D-210ENST00000489961 CA1P00915 261 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-210ENST00000489961 IGKV3-20P01619 116 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms