RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GABRA3P34903 492 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 RPA3P35244 121 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 INPP1P49441 399 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 RAB5CP51148 216 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 POLR2HP52434 150 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 DLX6P56179 175 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TCL1AP56279 114 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BDP58876 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 RAB5BP61020 215 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BCP62807 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 RPS25P62851 125 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 RPS28P62857 69 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 MRPS10P82664 201 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 CD164Q04900 197 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 BSPH1Q075Z2 132 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SLC38A11Q08AI6 406 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HSD52Q0P140 79 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PPP1R1AQ13522 171 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 EDDM3AQ14507 147 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SS18Q15532 418 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TSNQ15631 228 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST2H2BEQ16778 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ARHGAP11BQ3KRB8 267 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 COL5A1-AS1Q5SY13 56 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 C6orf52Q5T4I8 152 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TMEM244Q5VVB8 128 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 RPL22L1Q6P5R6 122 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 UNQ5815/PRO19632Q6UWF5 114 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HRCT1Q6UXD1 115 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HEPN1Q6WQI6 88 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SDIM1Q6ZPB5 146 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SSX6Q7RTT6 188 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LHFPL1Q86WI0 220 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 GKN2Q86XP6 184 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PDZD9Q8IXQ8 264 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 C20orf196Q8IYI0 205 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 C8orf59Q8N0T1 100 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 OR8I2Q8N0Y5 310 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 OR4C16Q8NGL9 310 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 OR1L8Q8NGR8 309 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 FAM45AQ8TCE6 357 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SLC37A2Q8TED4 501 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 THEM6Q8WUY1 208 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 EEF1AKMT1Q8WVE0 214 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CANT1Q8WVQ1 401 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 S100ZQ8WXG8 99 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ASB13Q8WXK3 278 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PP6455Q8WZ26 134 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BHQ93079 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ARL11Q969Q4 196 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MAGOHBQ96A72 148 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 DDIT4LQ96D03 193 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BNQ99877 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BMQ99879 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PRSS27Q9BQR3 290 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LXNQ9BS40 222 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 DOHHQ9BU89 302 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MAP1LC3BQ9GZQ8 125 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TMEM222Q9H0R3 208 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MAP1LC3AQ9H492 121 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 FAM96AQ9H5X1 160 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CXorf21Q9HAI6 301 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 NPVFQ9HCQ7 196 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PRTFDC1Q9NRG1 225 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SPANXB1Q9NS25 103 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 ACER3Q9NUN7 267 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 UQCC1Q9NVA1 299 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MED11Q9P086 117 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 DOK5Q9P104 306 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 COMMD3Q9UBI1 195 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 NAT8BQ9UHF3 227 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 PKIGQ9Y2B9 76 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HDGFL3Q9Y3E1 203 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LINC00312Q9Y6C7 94 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 V9GYH0 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LRRC37A3O60309 1634 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TECPR2O15040 1411 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MED1Q15648 1581 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 ERCC6L2Q5T890 1561 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 POLEQ07864 2286 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TIAM2Q8IVF5 1701 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 DSCAML1Q8TD84 2053 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 THSD7AQ9UPZ6 1657 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PTPRMP28827 1452 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 IGHV3OR15-7A0A075B7D8 119 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 A0A087WXM4 84 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 A0A0J9YX75 114 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 LOC107986453A0A1B0GWG9 222 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 A0A1W2PRS3 328 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 IGLC7A0M8Q6 106 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 OR51F1A6NGY5 319 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TMEM212A6NML5 194 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 IFITM5A6NNB3 132 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 KNCNA6PVL3 124 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 B4DEV8 164 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 C9JAW5 83 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 FNDC10F2Z333 226 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 INMT-MINDY4F8WBC2 141 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 J3QQQ9 107 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms