RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 LYPD1Q8N2G4 141 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 OR4X2Q8NGF9 303 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 WIPF2Q8TF74 440 aaPredicted RBP10.9□□□□□ -0.67
CUX1-209ENST00000487284 IGF2BP2-AS1Q96M15 143 aa10.9□□□□□ -0.67
CUX1-209ENST00000487284 TENM1Q9UKZ4 2725 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 BUB3O43684 328 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 IGHV3-11P01762 117 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 RPLP1P05386 114 aaKnown RBP10.89□□□□□ -0.67
CUX1-209ENST00000487284 ELANEP08246 267 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 GNG4P50150 75 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 PROK1P58294 105 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 TAS2R60P59551 318 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 FOXE3Q13461 319 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 SIGLEC15Q6ZMC9 328 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 OCC1Q8TAD7 63 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 MYOZ3Q8TDC0 251 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 ANAPC16Q96DE5 110 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 C17orf77Q96MU5 243 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 ATG101Q9BSB4 218 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 U3KQE9 123 aa10.89□□□□□ -0.67
CUX1-209ENST00000487284 NDUFA4O00483 81 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 GNG5P63218 68 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 TCTEX1D4Q5JR98 221 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 C1orf194Q5T5A4 169 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 OR8I2Q8N0Y5 310 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 RNF152Q8N8N0 203 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 GPR82Q96P67 336 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 METTL26Q96S19 204 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 AURKAIP1Q9NWT8 199 aaPredicted RBP10.88□□□□□ -0.67
CUX1-209ENST00000487284 KLF12Q9Y4X4 402 aa10.88□□□□□ -0.67
CUX1-209ENST00000487284 H7BYZ3 331 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 K7EN84 100 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 SLC17A3O00476 420 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 TCRAP04437 139 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 TMEM183BQ1AE95 376 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 KRTAP24-1Q3LI83 254 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 HIST2H2BDQ6DRA6 164 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 FAM24BQ8N5W8 94 aa10.87□□□□□ -0.67
CUX1-209ENST00000487284 FBN1P35555 2871 aaKnown RBP10.87□□□□□ -0.67
CUX1-209ENST00000487284 A0A087X0K7 114 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 GGCTO75223 188 aaKnown RBP10.86□□□□□ -0.67
CUX1-209ENST00000487284 ZNF253O75346 499 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 IGLV2-8P01709 118 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
CUX1-209ENST00000487284 ELOBQ15370 118 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 EXOC3-AS1Q8N2X6 119 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 C11orf44Q8N8P7 122 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 LINC00479Q96M42 142 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 SMAD5-AS1Q9Y6J3 95 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 ISLRO14498 428 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 PPP1R2P9O14990 202 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 ATF4P18848 351 aaPredicted RBP10.86□□□□□ -0.67
CUX1-209ENST00000487284 SFRP2Q96HF1 295 aa10.86□□□□□ -0.67
CUX1-209ENST00000487284 PEF1Q9UBV8 284 aaKnown RBP10.86□□□□□ -0.67
CUX1-209ENST00000487284 A0A1B0GUS0 222 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 APOHP02749 345 aaPredicted RBP10.85□□□□□ -0.67
CUX1-209ENST00000487284 CD28P10747 220 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 PSG9Q00887 426 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 FOXL1Q12952 345 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 UNQ9165/PRO28630Q6UXU0 137 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 CMTM2Q8TAZ6 248 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 FMC1Q96HJ9 113 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 OR5B12Q96R08 314 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 AAMDCQ9H7C9 122 aa10.85□□□□□ -0.67
CUX1-209ENST00000487284 TRAV34A0A0B4J273 112 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 ZNF207O43670 478 aaKnown RBP10.84□□□□□ -0.67
CUX1-209ENST00000487284 GCGP01275 180 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 FOLR2P14207 255 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 GALR1P47211 349 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 UBE2G1P62253 170 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 KHDC1LQ5JSQ8 128 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 ARL6IP6Q8N6S5 226 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 SMIM12Q96EX1 92 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 RPH3ALQ9UNE2 315 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 URGCP-MRPS24S4R325 110 aa10.84□□□□□ -0.67
CUX1-209ENST00000487284 TRBV6-1A0A0K0K1D8 114 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 PFN1P07737 140 aaKnown RBP10.83□□□□□ -0.68
CUX1-209ENST00000487284 RAB5AP20339 215 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 KRTAP10-3P60369 221 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 C16orf54Q6UWD8 224 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 C18orf65Q6ZTR6 163 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 BAGE2Q86Y30 109 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 OR10G8Q8NGN5 311 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 GLMPQ8WWB7 406 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 UBE2E2Q96LR5 201 aa10.83□□□□□ -0.68
CUX1-209ENST00000487284 TRBV24-1A0A075B6N3 115 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IGHV3-66A0A0C4DH42 116 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 CXCL1P09341 107 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 LGALS1P09382 135 aaKnown RBP10.82□□□□□ -0.68
CUX1-209ENST00000487284 MEOX2P50222 304 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 GPHB5Q86YW7 130 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 WFDC12Q8WWY7 111 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IMMP2LQ96T52 175 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 CITED2Q99967 270 aaPredicted RBP10.82□□□□□ -0.68
CUX1-209ENST00000487284 ZNF331Q9NQX6 463 aaPredicted RBP10.82□□□□□ -0.68
CUX1-209ENST00000487284 OSTCQ9NRP0 149 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IGHV3OR16-13A0A075B7E8 117 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IGHV3-49A0A0A0MS15 119 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 TGIF2-C20orf24A0A0A6YYL0 155 aa10.82□□□□□ -0.68
CUX1-209ENST00000487284 IGHV3-74A0A0B4J1X5 117 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms