RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ZMAT4Q9H898 229 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 DAZ1Q9NQZ3 744 aaKnown RBP12.82□□□□□ -0.36
VIM-205ENST00000485947 C19orf73Q9NVV2 129 aa12.82□□□□□ -0.36
VIM-205ENST00000485947 A0A1W2PS18 150 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 ZNF320A2RRD8 509 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 RPL7P18124 248 aaKnown RBP12.81□□□□□ -0.36
VIM-205ENST00000485947 BMI1P35226 326 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 UBE2L3P68036 154 aaKnown RBP12.81□□□□□ -0.36
VIM-205ENST00000485947 UQCC3Q6UW78 93 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 SBSPONQ8IVN8 264 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 TMPRSS5Q9H3S3 457 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 GNG13Q9P2W3 67 aa12.81□□□□□ -0.36
VIM-205ENST00000485947 IGHV3OR16-8A0A075B7F1 116 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 RBFOX3A6NFN3 312 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 C2orf70A6NJV1 201 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 BUB3O43684 328 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 IGHV4-30-4P0DP06 118 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 BCL2P10415 239 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 GUK1Q16774 197 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 LEMD1Q68G75 181 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 GRAMD2BQ96HH9 432 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 ASCL2Q99929 193 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 TXNDC17Q9BRA2 123 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 SMDT1Q9H4I9 107 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 TMEM231Q9H6L2 316 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 DNAH9Q9NYC9 4486 aa12.8□□□□□ -0.36
VIM-205ENST00000485947 EPPK1P58107 5090 aaKnown RBP12.79□□□□□ -0.36
VIM-205ENST00000485947 LOC102723971A0A1B0GUV8 181 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 NDUFS6O75380 124 aaKnown RBP12.79□□□□□ -0.36
VIM-205ENST00000485947 PYYP10082 97 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 HIST1H1EP10412 219 aaKnown RBP12.79□□□□□ -0.36
VIM-205ENST00000485947 FOLR2P14207 255 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 PEA15Q15121 130 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 DEFB114Q30KQ6 69 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 TOR2AQ5JU69 321 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 ZNF506Q5JVG8 444 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 OR8I2Q8N0Y5 310 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 DYNLRB2Q8TF09 96 aa12.79□□□□□ -0.36
VIM-205ENST00000485947 IGHV7-4-1A0A0J9YVY3 117 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 MRPS12O15235 138 aaKnown RBP12.78□□□□□ -0.36
VIM-205ENST00000485947 ZNF207O43670 478 aaKnown RBP12.78□□□□□ -0.36
VIM-205ENST00000485947 OR10J4P0C629 311 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 CBLN1P23435 193 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 CD300EQ496F6 205 aaPredicted RBP12.78□□□□□ -0.36
VIM-205ENST00000485947 C16orf54Q6UWD8 224 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 FXYD5Q96DB9 178 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 TM2D3Q9BRN9 247 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 EIF5A2Q9GZV4 153 aaKnown RBP12.78□□□□□ -0.36
VIM-205ENST00000485947 VAX2Q9UIW0 290 aa12.78□□□□□ -0.36
VIM-205ENST00000485947 A0A1W2PRE2 83 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 C3orf84H3BNL1 204 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 NBEAP1P0C6P0 100 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 GALR1P47211 349 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 MEOX2P50222 304 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 HAGHQ16775 308 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 ADAMTSL5Q6ZMM2 481 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 SLC7A5P1Q8MH63 180 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 RCHY1Q96PM5 261 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 SMPXQ9UHP9 88 aa12.77□□□□□ -0.37
VIM-205ENST00000485947 A0A087X0K7 114 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 TRAV25A0A0B4J276 109 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 TMEM213A2RRL7 107 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 PAGE4O60829 102 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 APOHP02749 345 aaPredicted RBP12.76□□□□□ -0.37
VIM-205ENST00000485947 CD5P06127 495 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 IGLC2P0DOY2 106 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 PDE6HQ13956 83 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 TM4SF20Q53R12 229 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 GLMPQ8WWB7 406 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 NKX6-2Q9C056 277 aaPredicted RBP12.76□□□□□ -0.37
VIM-205ENST00000485947 TUBA4BQ9H853 241 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 STAB2Q8WWQ8 2551 aa12.76□□□□□ -0.37
VIM-205ENST00000485947 FAM74A7A6NL05 159 aa12.75□□□□□ -0.37
VIM-205ENST00000485947 ZNF785A8K8V0 405 aa12.75□□□□□ -0.37
VIM-205ENST00000485947 ATF4P18848 351 aaPredicted RBP12.75□□□□□ -0.37
VIM-205ENST00000485947 MEF2BQ02080 365 aaPredicted RBP12.75□□□□□ -0.37
VIM-205ENST00000485947 ICAM4Q14773 271 aa12.75□□□□□ -0.37
VIM-205ENST00000485947 RHPN1-AS1Q9BWJ2 59 aa12.75□□□□□ -0.37
VIM-205ENST00000485947 TREM1Q9NP99 234 aa12.75□□□□□ -0.37
VIM-205ENST00000485947 TRBV19A0A075B6N1 114 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 IZUMO1RA6ND01 250 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 CHEK1O14757 476 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 ZNF253O75346 499 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 UBE2G2P60604 165 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 SIGLEC15Q6ZMC9 328 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 LYPD1Q8N2G4 141 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 RXFP4Q8TDU9 374 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 RARRES2Q99969 163 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 SPATA25Q9BR10 227 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 ZNF586Q9NXT0 402 aa12.74□□□□□ -0.37
VIM-205ENST00000485947 IGHV3OR16-13A0A075B7E8 117 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 IGHV3-49A0A0A0MS15 119 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 IGHV3-74A0A0B4J1X5 117 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 HELTA6NFD8 242 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 C11orf94C9JXX5 98 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 H3BQ15 152 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 CD81P60033 236 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 CST9LP1Q5W188 147 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 CITED4Q96RK1 184 aa12.73□□□□□ -0.37
VIM-205ENST00000485947 TCEAL7Q9BRU2 100 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms