RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RPL29P47914 159 aaKnown RBP5.97□□□□□ -1.45
USP40-216ENST00000485943 ARL16Q0P5N6 197 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 ACOT6Q3I5F7 207 aaPredicted RBP5.97□□□□□ -1.45
USP40-216ENST00000485943 FFAR4Q5NUL3 377 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 FAM78BQ5VT40 261 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 SPATA31B1PQ5VZV4 182 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 Q6ZWC4 215 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 IQCF2Q8IXL9 164 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 OR10J6PQ8NGY7 276 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 RARRES2Q99969 163 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 SLC50A1Q9BRV3 221 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 NPCDR1Q9BY65 106 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 SEPSECSQ9HD40 501 aaKnown RBP5.97□□□□□ -1.45
USP40-216ENST00000485943 RETNQ9HD89 108 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 MEGF8Q7Z7M0 2845 aa5.97□□□□□ -1.45
USP40-216ENST00000485943 IGHV3OR16-12A0A075B7B8 117 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 MED14OSP0DP75 135 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 LYL1P12980 280 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 CSN1S1P47710 185 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 PLP1P60201 277 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 OPCMLQ14982 345 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 ZNF124Q15973 351 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 GUK1Q16774 197 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 FAM74A1Q5RGS3 127 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 FOXI2Q6ZQN5 318 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 DCANP1Q8TF63 244 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 BLNKQ8WV28 456 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 TM2D3Q9BRN9 247 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 MRPL32Q9BYC8 188 aaKnown RBP5.96□□□□□ -1.46
USP40-216ENST00000485943 WDR61Q9GZS3 305 aaKnown RBP5.96□□□□□ -1.46
USP40-216ENST00000485943 CLEC5AQ9NY25 188 aa5.96□□□□□ -1.46
USP40-216ENST00000485943 CXorf65A6NEN9 183 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 PFDN1O60925 122 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 CXCL2P19875 107 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 CXCL3P19876 107 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 PSG9Q00887 426 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 HIST1H1AQ02539 215 aaPredicted RBP5.95□□□□□ -1.46
USP40-216ENST00000485943 OXA1LQ15070 435 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 KHDC3LQ587J8 217 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 TMEM182Q6ZP80 229 aaPredicted RBP5.95□□□□□ -1.46
USP40-216ENST00000485943 FAM24BQ8N5W8 94 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 HSD17B11Q8NBQ5 300 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 OR11H7Q8NGC8 314 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 OR11H2Q8NH07 326 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 SVIPQ8NHG7 77 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 MFFQ9GZY8 342 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 TP53TG1Q9Y2A0 90 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 GOLT1BQ9Y3E0 138 aa5.95□□□□□ -1.46
USP40-216ENST00000485943 KANTRA0A1W2PQU2 76 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 ARPC5O15511 151 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 MBP02144 154 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 AMBPP02760 352 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 SNRPCP09234 159 aaKnown RBP5.94□□□□□ -1.46
USP40-216ENST00000485943 HLA-DRB4P13762 266 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 C4BPBP20851 252 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 FXYD7P58549 80 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 EIF5AP63241 154 aaKnown RBP5.94□□□□□ -1.46
USP40-216ENST00000485943 IL15RAQ13261 267 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 VWC2Q2TAL6 325 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 AKR1C8PQ5T2L2 129 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 CMTM2Q8TAZ6 248 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 PAXXQ9BUH6 204 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 OR51M1Q9H341 326 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 XCL2Q9UBD3 114 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 HLA-DRB4X5D2U9 266 aa5.94□□□□□ -1.46
USP40-216ENST00000485943 H0YIZ8 118 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 C3orf84H3BNL1 204 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 H3BTX0 84 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 TAAR5O14804 337 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 HIST1H1EP10412 219 aaKnown RBP5.93□□□□□ -1.46
USP40-216ENST00000485943 TSPOP30536 169 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 UBE2L3P68036 154 aaKnown RBP5.93□□□□□ -1.46
USP40-216ENST00000485943 PMS2P11Q13670 270 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 FAM122CQ6P4D5 195 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 RNF182Q8N6D2 247 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 MUC7Q8TAX7 377 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 RPUSD4Q96CM3 377 aaKnown RBP5.93□□□□□ -1.46
USP40-216ENST00000485943 RNF183Q96D59 192 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 GNPNAT1Q96EK6 184 aaPredicted RBP5.93□□□□□ -1.46
USP40-216ENST00000485943 RNF126Q9BV68 326 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 SAV1Q9H4B6 383 aaPredicted RBP5.93□□□□□ -1.46
USP40-216ENST00000485943 FUT9Q9Y231 359 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 PRELID1Q9Y255 219 aa5.93□□□□□ -1.46
USP40-216ENST00000485943 AGRNO00468 2067 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 A0A087X0K7 114 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 A0A0J9YWU9 116 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 H3BMM0 161 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 K7EQM0 130 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 JTBO76095 146 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 INSP01308 110 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 HBE1P02100 147 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 M6PRP20645 277 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 CDC34P49427 236 aaPredicted RBP5.92□□□□□ -1.46
USP40-216ENST00000485943 PSG3Q16557 428 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 TMEM78Q5T7P6 136 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 IGFL4Q6B9Z1 124 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 ZFAND6Q6FIF0 208 aa5.92□□□□□ -1.46
USP40-216ENST00000485943 TRPT1Q86TN4 253 aaKnown RBP5.92□□□□□ -1.46
USP40-216ENST00000485943 OR10G4Q8NGN3 311 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms