RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 LCN12Q6JVE5 192 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ADAMTSL5Q6ZMM2 481 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 RBPMS2Q6ZRY4 209 aaKnown RBP6.24□□□□□ -1.41
SYNE1-225ENST00000481502 TCF24Q7RTU0 167 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 RXFP4Q8TDU9 374 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 DYNLRB2Q8TF09 96 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 FXYD5Q96DB9 178 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 MRPL53Q96EL3 112 aaKnown RBP6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF503Q96F45 646 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 DUX3Q96PT4 197 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 MDFIQ99750 246 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 AAMDCQ9H7C9 122 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 FBN1P35555 2871 aaKnown RBP6.24□□□□□ -1.41
SYNE1-225ENST00000481502 TENM1Q9UKZ4 2725 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 TRAV5A0A0B4J249 113 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 RAB19A4D1S5 217 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 OR4C46A6NHA9 309 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 FBLL1A6NHQ2 334 aaKnown RBP6.23□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF207O43670 478 aaKnown RBP6.23□□□□□ -1.41
SYNE1-225ENST00000481502 SAP30O75446 220 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 SNRPD3P62318 126 aaKnown RBP6.23□□□□□ -1.41
SYNE1-225ENST00000481502 MORN5Q5VZ52 161 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 RPUSD4Q96CM3 377 aaKnown RBP6.23□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF331Q9NQX6 463 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-225ENST00000481502 SMAD5-AS1Q9Y6J3 95 aa6.23□□□□□ -1.41
SYNE1-225ENST00000481502 IGHV3OR16-8A0A075B7F1 116 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 F6UZH7 168 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 H3BQ15 152 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 J3QL48 77 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 K7EQG2 157 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 DNASE2O00115 360 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-225ENST00000481502 NDUFA5Q16718 116 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 LEMD1Q68G75 181 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 UQCC3Q6UW78 93 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 SSX7Q7RTT5 188 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 EIF4E3Q8N5X7 224 aaKnown RBP6.22□□□□□ -1.41
SYNE1-225ENST00000481502 DCANP1Q8TF63 244 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 HIST1H2BAQ96A08 127 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 FAM210AQ96ND0 272 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 OTORQ9NRC9 128 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF586Q9NXT0 402 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 VAX2Q9UIW0 290 aa6.22□□□□□ -1.41
SYNE1-225ENST00000481502 RBAKDNA6NC62 111 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 LINC00862A6NCI5 91 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 FAM74A7A6NL05 159 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 TMEM250H0YL14 139 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 SOCS3O14543 225 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 PDE6DO43924 150 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 SLC25A5P05141 298 aaKnown RBP6.21□□□□□ -1.42
SYNE1-225ENST00000481502 S100A9P06702 114 aaKnown RBP6.21□□□□□ -1.42
SYNE1-225ENST00000481502 PYYP10082 97 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 BCL2P10415 239 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 CSN1S1P47710 185 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 RPL11P62913 178 aaKnown RBP6.21□□□□□ -1.42
SYNE1-225ENST00000481502 CD300EQ496F6 205 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-225ENST00000481502 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 CCDC28AQ8IWP9 274 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 TMEM61Q8N0U2 210 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 C5orf17Q8NAS9 161 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 MS4A6AQ9H2W1 248 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 PPP1R14DQ9NXH3 145 aa6.21□□□□□ -1.42
SYNE1-225ENST00000481502 NOTCH3Q9UM47 2321 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 IGHV3OR16-13A0A075B7E8 117 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 IGHV3-49A0A0A0MS15 119 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 IGHV3-74A0A0B4J1X5 117 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 TRBV7-9A0A0J9YWB2 115 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 RBFOX3A6NFN3 312 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 K7EQM0 130 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 NDUFB4O95168 129 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 OR10J4P0C629 311 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 FGF8P55075 233 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-225ENST00000481502 MEF2BQ02080 365 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-225ENST00000481502 PEA15Q15121 130 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 PSG3Q16557 428 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 BEAN1Q3B7T3 259 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 ZNF506Q5JVG8 444 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 CMTM2Q8TAZ6 248 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 C16orf92Q96LL3 132 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 C17orf77Q96MU5 243 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 CLUHP3Q96NS8 147 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 Q9H3A6 140 aa6.2□□□□□ -1.42
SYNE1-225ENST00000481502 ZNF256Q9Y2P7 627 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-225ENST00000481502 IGHV3-66A0A0C4DH42 116 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 TRBV6-1A0A0K0K1D8 114 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 LOC102723971A0A1B0GUV8 181 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 PGPA6NDG6 321 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 C11orf94C9JXX5 98 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 HMGB3O15347 200 aaKnown RBP6.19□□□□□ -1.42
SYNE1-225ENST00000481502 PAGE4O60829 102 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 RANP62826 216 aaKnown RBP6.19□□□□□ -1.42
SYNE1-225ENST00000481502 SUMO1P63165 101 aaKnown RBP6.19□□□□□ -1.42
SYNE1-225ENST00000481502 CCL20P78556 96 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 EGFEM1PQ0D2K5 195 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 C4orf48Q5BLP8 95 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 HIST2H2BDQ6DRA6 164 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 C11orf52Q96A22 123 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 TMPRSS5Q9H3S3 457 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 GNG13Q9P2W3 67 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 EPDR1Q9UM22 224 aa6.19□□□□□ -1.42
SYNE1-225ENST00000481502 LENEPQ9Y5L5 61 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms