RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MCRIP2Q9BUT9 160 aaKnown RBP7.72□□□□□ -1.17
USP39-215ENST00000481409 AAMDCQ9H7C9 122 aa7.72□□□□□ -1.17
USP39-215ENST00000481409 NRN1Q9NPD7 142 aa7.72□□□□□ -1.17
USP39-215ENST00000481409 OTORQ9NRC9 128 aa7.72□□□□□ -1.17
USP39-215ENST00000481409 ZNF586Q9NXT0 402 aa7.72□□□□□ -1.17
USP39-215ENST00000481409 IGHV3OR16-8A0A075B7F1 116 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 C11orf94C9JXX5 98 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 ZNF207O43670 478 aaKnown RBP7.71□□□□□ -1.18
USP39-215ENST00000481409 PAGE4O60829 102 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 APOHP02749 345 aaPredicted RBP7.71□□□□□ -1.18
USP39-215ENST00000481409 CSN3P07498 182 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 PYYP10082 97 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 FAM90A2PQ658T7 463 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 HIST1H2BAQ96A08 127 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 MRPL53Q96EL3 112 aaKnown RBP7.71□□□□□ -1.18
USP39-215ENST00000481409 TMPRSS5Q9H3S3 457 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 MLXQ9UH92 298 aa7.71□□□□□ -1.18
USP39-215ENST00000481409 A0A1B0GV50 99 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 FBLL1A6NHQ2 334 aaKnown RBP7.7□□□□□ -1.18
USP39-215ENST00000481409 H3BQ15 152 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 ISLRO14498 428 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 S100A9P06702 114 aaKnown RBP7.7□□□□□ -1.18
USP39-215ENST00000481409 ID1P41134 155 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 RIPPLY3P57055 190 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 HAGHQ16775 308 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 TOR2AQ5JU69 321 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 CST9LP1Q5W188 147 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 TCF24Q7RTU0 167 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 CCDC28AQ8IWP9 274 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 LINC00482Q8N8I6 264 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 C5orf17Q8NAS9 161 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 DYNLRB2Q8TF09 96 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 GPR61Q9BZJ8 451 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 ZNF331Q9NQX6 463 aaPredicted RBP7.7□□□□□ -1.18
USP39-215ENST00000481409 SMAD5-AS1Q9Y6J3 95 aa7.7□□□□□ -1.18
USP39-215ENST00000481409 NIPBLQ6KC79 2804 aaeCLIP7.7□□□□□ -1.18
USP39-215ENST00000481409 K7EQM0 130 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 TSPAN4O14817 238 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 NDUFB4O95168 129 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 CSN1S1P47710 185 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 CMC4P56277 68 aaPredicted RBP7.69□□□□□ -1.18
USP39-215ENST00000481409 ICAM4Q14773 271 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 DEFB114Q30KQ6 69 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 FAM74A3Q4VXF1 159 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 RBPMS2Q6ZRY4 209 aaKnown RBP7.69□□□□□ -1.18
USP39-215ENST00000481409 CMTM2Q8TAZ6 248 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 BLNKQ8WV28 456 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 C11orf52Q96A22 123 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 DUX3Q96PT4 197 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 SPAG8Q99932 426 aaPredicted RBP7.69□□□□□ -1.18
USP39-215ENST00000481409 SLC35B3Q9H1N7 401 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 Q9H3A6 140 aa7.69□□□□□ -1.18
USP39-215ENST00000481409 PGPA6NDG6 321 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 KRBOX1C9JBD0 128 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 CD81P60033 236 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 UBE2G2P60604 165 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 SNRPD3P62318 126 aaKnown RBP7.68□□□□□ -1.18
USP39-215ENST00000481409 RANP62826 216 aaKnown RBP7.68□□□□□ -1.18
USP39-215ENST00000481409 RPL11P62913 178 aaKnown RBP7.68□□□□□ -1.18
USP39-215ENST00000481409 SUMO1P63165 101 aaKnown RBP7.68□□□□□ -1.18
USP39-215ENST00000481409 C9orf66Q5T8R8 295 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 LCN12Q6JVE5 192 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 WFDC9Q8NEX5 89 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 RARRES2Q99969 163 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 ATG101Q9BSB4 218 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 TREM1Q9NP99 234 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 YTHDF2Q9Y5A9 579 aaKnown RBP7.68□□□□□ -1.18
USP39-215ENST00000481409 JMJD1CQ15652 2540 aa7.68□□□□□ -1.18
USP39-215ENST00000481409 IGHV3OR16-13A0A075B7E8 117 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 IGHV3-49A0A0A0MS15 119 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 IGHV3-74A0A0B4J1X5 117 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 IGHV3-66A0A0C4DH42 116 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 TMEM218A2RU14 115 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 RBAKDNA6NC62 111 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 GGTLC3B5MD39 225 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 DNASE2O00115 360 aaPredicted RBP7.67□□□□□ -1.18
USP39-215ENST00000481409 SOCS3O14543 225 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 EIF3GO75821 320 aaKnown RBP eCLIP7.67□□□□□ -1.18
USP39-215ENST00000481409 SLC25A5P05141 298 aaKnown RBP7.67□□□□□ -1.18
USP39-215ENST00000481409 SRP19P09132 144 aaKnown RBP7.67□□□□□ -1.18
USP39-215ENST00000481409 ADAMTSL5Q6ZMM2 481 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 LURAP1LQ8IV03 231 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 DCANP1Q8TF63 244 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 SMIM12Q96EX1 92 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 C16orf92Q96LL3 132 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 FAM110AQ9BQ89 295 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 ZMAT5Q9UDW3 170 aaKnown RBP7.67□□□□□ -1.18
USP39-215ENST00000481409 EPDR1Q9UM22 224 aa7.67□□□□□ -1.18
USP39-215ENST00000481409 TRBV6-1A0A0K0K1D8 114 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 OR4C46A6NHA9 309 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 K7EQG2 157 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 WIPF1O43516 503 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 SAP30O75446 220 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 IGLV1-51P01701 117 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 ATP5G3P48201 142 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 TAS2R60P59551 318 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 PSG3Q16557 428 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 SOHLH1Q5JUK2 328 aa7.66□□□□□ -1.18
USP39-215ENST00000481409 CYB561D1Q8N8Q1 229 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms