RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ZC2HC1BQ5TFG8 222 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 CLEC19AQ6UXS0 136 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 SIGLEC12Q96PQ1 595 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 GNG5P63218 68 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 SAP25Q8TEE9 199 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 PKIGQ9Y2B9 76 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 TRGV4A0A0C4DH28 118 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 EVI2AP22794 236 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 SMIM20Q8N5G0 67 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 ATP5G1P05496 136 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 TRAV41A0A0B4J266 112 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 IGLV3-19P01714 112 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 IGHV3-48P01763 117 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 TRPT1Q86TN4 253 aaKnown RBP10.97□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE5Q13069 117 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE6Q13070 117 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 CD55P08174 381 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 RBM3P98179 157 aaKnown RBP10.97□□□□□ -0.65
COL6A3-209ENST00000472056 WFDC1Q9HC57 220 aa10.97□□□□□ -0.65
COL6A3-209ENST00000472056 IGKV1D-13A0A0B4J2D9 117 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 LILRA1O75019 489 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 IGKV1-13P0DP09 117 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 PRO1854Q9UHT4 67 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 NCR2O95944 276 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 HGFACQ04756 655 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 RPP25Q9BUL9 199 aaKnown RBP10.96□□□□□ -0.65
COL6A3-209ENST00000472056 SNHG12Q9BXW3 62 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 PRSS46E5RG02 174 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 PAQR4Q8N4S7 273 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-209ENST00000472056 FAM168AQ92567 244 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 PRSS22Q9GZN4 317 aa10.96□□□□□ -0.65
COL6A3-209ENST00000472056 SRRM5B3KS81 715 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 SS18Q15532 418 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 NPIPB5A8MRT5 1133 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 TMEM256Q8N2U0 113 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 KLHDC3Q9BQ90 382 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 SLC25A16P16260 332 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 BSPH1Q075Z2 132 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 MESP1Q9BRJ9 268 aa10.96□□□□□ -0.66
COL6A3-209ENST00000472056 TRAV8-3A0A0A6YYJ7 113 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 HAX1O00165 279 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 IGHV2-5P01817 119 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 hDV102S1A0JD36 115 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 IGHV2-26A0A0B4J1V2 119 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 DSCR9P59020 149 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 PYYP10082 97 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 Q6ZVH6 145 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 TMEM158Q8WZ71 300 aa10.95□□□□□ -0.66
COL6A3-209ENST00000472056 POLR3KQ9Y2Y1 108 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-209ENST00000472056 A0A087WX48 190 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 DEPPQ9NTK1 212 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 PMS2P5A8MQ11 134 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 M0R1W7 72 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 LYZL1Q6UWQ5 148 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 SLC25A45Q8N413 288 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 GLMPQ8WWB7 406 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 CHCHD5Q9BSY4 110 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 IGLC2P0DOY2 106 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 IGLC3P0DOY3 106 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 VDAC2P45880 294 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-209ENST00000472056 LOC101059948A0A1B0GTJ6 334 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 CRIM1Q9NZV1 1036 aa10.94□□□□□ -0.66
COL6A3-209ENST00000472056 CEND1Q8N111 149 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 LIME1Q9H400 295 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 ZNF319Q9P2F9 582 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 TNRC6BQ9UPQ9 1833 aaKnown RBP10.93□□□□□ -0.66
COL6A3-209ENST00000472056 MYO9AB2RTY4 2548 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 IGKV1-9A0A0C4DH69 117 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 C6orf226Q5I0X4 101 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 PRIMA1Q86XR5 153 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 CSTL1Q9H114 145 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 SMIM27A0A1W2PRY6 76 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 C4orf51C9J302 202 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 ZNF114Q8NC26 417 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 SHISA9B4DS77 424 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 C1QCP02747 245 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 GAS1P54826 345 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 ANKRD29Q8N6D5 301 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 C18orf32Q8TCD1 76 aa10.93□□□□□ -0.66
COL6A3-209ENST00000472056 F8VRH5 84 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 ACACBO00763 2458 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 WNT2P09544 360 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 C15orf32Q32M92 178 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 FDCSPQ8NFU4 85 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 YPEL3P61236 119 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-209ENST00000472056 IMMP1LQ96LU5 166 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 ATOX1O00244 68 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 IGHG3P01860 377 aa10.92□□□□□ -0.66
COL6A3-209ENST00000472056 Q8N8P6 123 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 FOXL2P58012 376 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 WIPF2Q8TF74 440 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-209ENST00000472056 A0A0A6YYD4 124 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 SH2D1AO60880 128 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 NPC2P61916 151 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 PPP1R32Q7Z5V6 425 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 RNASE6Q93091 150 aaKnown RBP10.91□□□□□ -0.66
COL6A3-209ENST00000472056 IGHV3-64A0A075B6Q5 118 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 LOC102723996A0A087X1L8 192 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 RCHY1Q96PM5 261 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 CRYGSP22914 178 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms