RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NUDT15Q9NV35 164 aa11.57□□□□□ -0.56
COL9A3-208ENST00000469802 PLA2G2EQ9NZK7 142 aa11.57□□□□□ -0.56
COL9A3-208ENST00000469802 HERC2O95714 4834 aa11.57□□□□□ -0.56
COL9A3-208ENST00000469802 CXCL2P19875 107 aa11.56□□□□□ -0.56
COL9A3-208ENST00000469802 PSG3Q16557 428 aa11.56□□□□□ -0.56
COL9A3-208ENST00000469802 ZNF431Q8TF32 576 aaPredicted RBP11.56□□□□□ -0.56
COL9A3-208ENST00000469802 TMEM208Q9BTX3 173 aa11.56□□□□□ -0.56
COL9A3-208ENST00000469802 RNF24Q9Y225 148 aa11.56□□□□□ -0.56
COL9A3-208ENST00000469802 TRAV6A0A075B6T7 132 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 PLAC8L1A1L4L8 177 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 GOSR2O14653 212 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 TSPOP30536 169 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 B2MP61769 119 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 HIST1H1AQ02539 215 aaPredicted RBP11.55□□□□□ -0.56
COL9A3-208ENST00000469802 LCN15Q6UWW0 184 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 LINC00305Q7Z4B0 112 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 SEC22CQ9BRL7 303 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 CCDC32Q9BV29 185 aa11.55□□□□□ -0.56
COL9A3-208ENST00000469802 ZNF331Q9NQX6 463 aaPredicted RBP11.55□□□□□ -0.56
COL9A3-208ENST00000469802 ZNF705GA8MUZ8 300 aaPredicted RBP11.54□□□□□ -0.56
COL9A3-208ENST00000469802 PRM2P04554 102 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 ZNF846Q147U1 533 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 MORN5Q5VZ52 161 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 LINC00336Q6ZUF6 198 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 S100ZQ8WXG8 99 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 TMEM37Q8WXS4 190 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 BATF3Q9NR55 127 aa11.54□□□□□ -0.56
COL9A3-208ENST00000469802 TRAV12-2A0A075B6T6 113 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 LYRM9A8MSI8 78 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 L7N2F9 121 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 DAD1P61803 113 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 VAMP2P63027 116 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 VWC2Q2TAL6 325 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 RPUSD4Q96CM3 377 aaKnown RBP11.53□□□□□ -0.56
COL9A3-208ENST00000469802 SLC50A1Q9BRV3 221 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 PTTG2Q9NZH5 202 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 LSM5Q9Y4Y9 91 aaKnown RBP11.53□□□□□ -0.56
COL9A3-208ENST00000469802 PKHD1P08F94 4074 aa11.53□□□□□ -0.56
COL9A3-208ENST00000469802 FAM25EA8MYX2 175 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 SLC17A3O00476 420 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 COX7A2P2O60397 106 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 IGLC2P0DOY2 106 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 HTN3P15516 51 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 IL15RAQ13261 267 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 OPCMLQ14982 345 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 TMEM88Q6PEY1 159 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 BPIFA4PQ86YQ2 179 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 TMEM256Q8N2U0 113 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 C12orf45Q8N5I9 185 aaPredicted RBP11.52□□□□□ -0.57
COL9A3-208ENST00000469802 C2orf50Q96LR7 162 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 WDR83OSQ9Y284 106 aa11.52□□□□□ -0.57
COL9A3-208ENST00000469802 A0A1B0GVY2 172 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 C5orf51A6NDU8 294 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 AZU1P20160 251 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 CAMLGP49069 296 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 CAV2P51636 162 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 LGALS9BQ3B8N2 356 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 C10orf113Q5VZT2 155 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 LRRC20Q8TCA0 184 aa11.51□□□□□ -0.57
COL9A3-208ENST00000469802 LYRM2Q9NU23 88 aaPredicted RBP11.51□□□□□ -0.57
COL9A3-208ENST00000469802 FAM24AA6NFZ4 105 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 RTL8CO15255 209 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 CST7O76096 145 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 H2AFB2P0C5Z0 115 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 PRB4P10163 310 aaPredicted RBP11.5□□□□□ -0.57
COL9A3-208ENST00000469802 CDKN1BP46527 198 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 BCAP31P51572 246 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 TAS2R60P59551 318 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 RHOBP62745 196 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 RNF212Q495C1 297 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 Q6ZR54 194 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 NRARPQ7Z6K4 114 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 UQCC1Q9NVA1 299 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 KIAA1109Q2LD37 5005 aa11.5□□□□□ -0.57
COL9A3-208ENST00000469802 IGSF23A1L1A6 192 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 H3BQ15 152 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 SNRPCP09234 159 aaKnown RBP11.49□□□□□ -0.57
COL9A3-208ENST00000469802 SULT1A1P50225 295 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 RAB31Q13636 194 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 MIC13Q5XKP0 118 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 SAT2Q96F10 170 aaPredicted RBP11.49□□□□□ -0.57
COL9A3-208ENST00000469802 DNAJC4Q9NNZ3 241 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 PXMP4Q9Y6I8 212 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 PKD1P98161 4303 aa11.49□□□□□ -0.57
COL9A3-208ENST00000469802 PRAC2D3DTV9 90 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 H3BTX0 84 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 PVALBP20472 110 aaPredicted RBP11.48□□□□□ -0.57
COL9A3-208ENST00000469802 ASAH1Q13510 395 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 RAB32Q13637 225 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 Q6ZRG5 221 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 UBE2DNLQ8IWF7 75 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 TMEM252Q8N6L7 170 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 C15orf53Q8NAA6 179 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 RNASE8Q8TDE3 154 aaKnown RBP11.48□□□□□ -0.57
COL9A3-208ENST00000469802 CHAC2Q8WUX2 184 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 C16orf74Q96GX8 76 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 LINC01587Q99440 93 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 C20orf144Q9BQM9 153 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 PPP1R14DQ9NXH3 145 aa11.48□□□□□ -0.57
COL9A3-208ENST00000469802 UBE2L5PA0A1B0GUS4 154 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms