RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 C8orf31Q8N9H6 132 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 SYT8Q8NBV8 401 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 TRBV20OR9-2A0A075B6H5 130 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 K7EP13 123 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 SNAI2O43623 268 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IGKV1D-33P01593 117 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IGKV1-33P01594 117 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 NBEAP1P0C6P0 100 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 APELAP0DMC3 54 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 KIR3DS1Q14943 382 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 MORN3Q6PF18 240 aaPredicted RBP6.22□□□□□ -1.41
USP54-210ENST00000466048 TEX43Q6ZNM6 134 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 LEAP2Q969E1 77 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 METTL26Q96S19 204 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 DNAH14Q0VDD8 3507 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IGHV2-26A0A0B4J1V2 119 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 C9orf118A6NHY6 69 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 SYS1-DBNDD2H3BUS1 97 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 C5orf24Q7Z6I8 188 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 PPP1R27Q86WC6 154 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 C17orf98A8MV24 154 aa6.21□□□□□ -1.41
USP54-210ENST00000466048 CCL3L1P16619 93 aa6.21□□□□□ -1.41
USP54-210ENST00000466048 EIF4EBP1Q13541 118 aaPredicted RBP6.21□□□□□ -1.41
USP54-210ENST00000466048 C8orf46Q8TAG6 207 aa6.21□□□□□ -1.41
USP54-210ENST00000466048 GPHA2Q96T91 129 aa6.21□□□□□ -1.41
USP54-210ENST00000466048 MYOD1P15172 320 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 ADAMTSL5Q6ZMM2 481 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 MYO18BQ8IUG5 2567 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 TRAV5A0A0B4J249 113 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 GHRHP01286 108 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 IGKV1-39P01597 117 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 IGKV1D-39P04432 117 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 YPEL3P61236 119 aaPredicted RBP6.21□□□□□ -1.42
USP54-210ENST00000466048 TMEM200BQ69YZ2 307 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 FAM53AQ6NSI3 398 aaPredicted RBP6.21□□□□□ -1.42
USP54-210ENST00000466048 SLC25A48Q6ZT89 311 aaKnown RBP6.21□□□□□ -1.42
USP54-210ENST00000466048 BCL6BQ8N143 479 aaPredicted RBP6.21□□□□□ -1.42
USP54-210ENST00000466048 C3orf56Q8N813 242 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 C10orf105Q8TEF2 133 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 IFI27L2Q9H2X8 130 aa6.21□□□□□ -1.42
USP54-210ENST00000466048 SEPSECSQ9HD40 501 aaKnown RBP6.21□□□□□ -1.42
USP54-210ENST00000466048 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.2□□□□□ -1.42
USP54-210ENST00000466048 IGHV1-69DA0A0B4J2H0 117 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 MUC21A0A0G2JKD1 596 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 MUC21A0A140T8X8 626 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 IGHV1-69P01742 117 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 IGKCP01834 107 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 CGB3P0DN86 165 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 CGB7P0DN87 165 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 TFF3Q07654 80 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 C17orf58Q2M2W7 97 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 TM4SF20Q53R12 229 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 MUC21Q5SSG8 566 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 OR5AN1Q8NGI8 311 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 K7EP34 96 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 PSG3Q16557 428 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 SCGB3A1Q96QR1 104 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 TRGV3P03979 118 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 LOXL1Q08397 574 aaPredicted RBP6.2□□□□□ -1.42
USP54-210ENST00000466048 GOLT1AQ6ZVE7 132 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 SRSF8Q9BRL6 282 aaKnown RBP6.2□□□□□ -1.42
USP54-210ENST00000466048 CSTL1Q9H114 145 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 C11orf68Q9H3H3 251 aaKnown RBP6.2□□□□□ -1.42
USP54-210ENST00000466048 TRBV20-1A0A075B6N2 111 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 CACNG7P62955 275 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 CT83Q5H943 113 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 TMEM14EPQ6UXP3 125 aa6.2□□□□□ -1.42
USP54-210ENST00000466048 RAMP3O60896 148 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 TFF1P04155 84 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 DLX6P56179 175 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 ATXN8Q156A1 80 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 KLF17Q5JT82 389 aaPredicted RBP6.19□□□□□ -1.42
USP54-210ENST00000466048 LINC00311Q8N616 119 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 ANKHD1Q8IWZ3 2542 aaKnown RBP6.19□□□□□ -1.42
USP54-210ENST00000466048 IGKV3-7A0A075B6H7 116 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 A0A0G2JRQ6 117 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 P0C879 139 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 PAX9P55771 341 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 ORMDL2Q53FV1 153 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 SPSB3Q6PJ21 355 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 LYPD6BQ8NI32 183 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 PPDPFLQ8WWR9 84 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 OTORQ9NRC9 128 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 SHANK1Q9Y566 2161 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.19□□□□□ -1.423e-6■■■□□ 18.7
USP54-210ENST00000466048 SAA2-SAA4A0A096LPE2 208 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 PSMB11A5LHX3 300 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 GAGE12HA6NDE8 117 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 SAA2P0DJI9 122 aaPredicted RBP6.19□□□□□ -1.42
USP54-210ENST00000466048 S100A7L2Q5SY68 101 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 TMEM101Q96IK0 257 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 C18orf15Q96N68 181 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 RNASE7Q9H1E1 156 aaKnown RBP6.19□□□□□ -1.42
USP54-210ENST00000466048 KLF12Q9Y4X4 402 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 PHLDA3Q9Y5J5 127 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 A0A1W2PRX2 142 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 POU2AF1Q16633 256 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 C19orf54Q5BKX5 351 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 Q6ZRM9 215 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms