RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 C20orf173Q96LM9 149 aa13.55□□□□□ -0.24
HOXA9-203ENST00000465941 ARPC5LQ9BPX5 153 aa13.55□□□□□ -0.24
HOXA9-203ENST00000465941 ZNF331Q9NQX6 463 aaPredicted RBP13.55□□□□□ -0.24
HOXA9-203ENST00000465941 RPRMQ9NS64 109 aa13.55□□□□□ -0.24
HOXA9-203ENST00000465941 UBE2CO00762 179 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 HIST1H1EP10412 219 aaKnown RBP13.54□□□□□ -0.24
HOXA9-203ENST00000465941 TRPT1Q86TN4 253 aaKnown RBP13.54□□□□□ -0.24
HOXA9-203ENST00000465941 SPATA25Q9BR10 227 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 SLC50A1Q9BRV3 221 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 CSTL1Q9H114 145 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 ZMAT4Q9H898 229 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 ZNF586Q9NXT0 402 aa13.54□□□□□ -0.24
HOXA9-203ENST00000465941 H3BMM0 161 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 ZNF253O75346 499 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 MBP02144 154 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 C1QBP02746 253 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 SNRPCP09234 159 aaKnown RBP13.53□□□□□ -0.24
HOXA9-203ENST00000465941 IGFL4Q6B9Z1 124 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 FOXI2Q6ZQN5 318 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 OR10G4Q8NGN3 311 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 OR10G9Q8NGN4 311 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 OR10G7Q8NGN6 311 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 SH3BGRL3Q9H299 93 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 OR51M1Q9H341 326 aa13.53□□□□□ -0.24
HOXA9-203ENST00000465941 SAV1Q9H4B6 383 aaPredicted RBP13.53□□□□□ -0.24
HOXA9-203ENST00000465941 TRBV19A0A075B6N1 114 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 A0A1W2PPV4 95 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 PYYP10082 97 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 HLA-DRB4P13762 266 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 TAS2R45P59539 299 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 RAB2AP61019 212 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 Q6ZWC4 215 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 RNF182Q8N6D2 247 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 CLUHP3Q96NS8 147 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 CLEC5AQ9NY25 188 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 HLA-DRB4X5D2U9 266 aa13.52□□□□□ -0.25
HOXA9-203ENST00000465941 H3BTX0 84 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 SLC17A3O00476 420 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 DEFB1P60022 68 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 PDE6HQ13956 83 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 PSG3Q16557 428 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 KHDC3LQ587J8 217 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 GDF5OSQ5U4N7 250 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 EBLN2Q6P2I7 272 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 RPP25LQ8N5L8 163 aaKnown RBP13.51□□□□□ -0.25
HOXA9-203ENST00000465941 RNF141Q8WVD5 230 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 HYLS1Q96M11 299 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 PAXXQ9BUH6 204 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 U3KQK5 164 aa13.51□□□□□ -0.25
HOXA9-203ENST00000465941 A0A0J9YX75 114 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 KANTRA0A1W2PQU2 76 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 BCL2L11O43521 198 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 NBEAP1P0C6P0 100 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 SPP1P10451 314 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 MORN3Q6PF18 240 aaPredicted RBP13.5□□□□□ -0.25
HOXA9-203ENST00000465941 TMUB2Q71RG4 321 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 FXYD5Q96DB9 178 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 ZNF503Q96F45 646 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 COL7A1Q02388 2944 aa13.5□□□□□ -0.25
HOXA9-203ENST00000465941 F6UB75 175 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 OR7C2O60412 319 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 NDUFB4O95168 129 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 HLA-DMBP28068 263 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 LGALSLQ3ZCW2 172 aaPredicted RBP13.49□□□□□ -0.25
HOXA9-203ENST00000465941 TMEM41BQ5BJD5 291 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 FAM122CQ6P4D5 195 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 ZNF738Q8NE65 137 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 RCHY1Q96PM5 261 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 TP53TG1Q9Y2A0 90 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 TGP01266 2768 aa13.49□□□□□ -0.25
HOXA9-203ENST00000465941 GIG44P09565 113 aaPredicted RBP13.48□□□□□ -0.25
HOXA9-203ENST00000465941 NUTF2P61970 127 aaKnown RBP13.48□□□□□ -0.25
HOXA9-203ENST00000465941 PSG9Q00887 426 aa13.48□□□□□ -0.25
HOXA9-203ENST00000465941 PQLC2Q6ZP29 291 aa13.48□□□□□ -0.25
HOXA9-203ENST00000465941 BLNKQ8WV28 456 aa13.48□□□□□ -0.25
HOXA9-203ENST00000465941 A8MTW9 85 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 PFDN1O60925 122 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 CA1P00915 261 aaPredicted RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 OR10J4P0C629 311 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 CDC34P49427 236 aaPredicted RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 CD300CQ08708 224 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 RAB24Q969Q5 203 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 RPUSD4Q96CM3 377 aaKnown RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 RNF183Q96D59 192 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 MRPL53Q96EL3 112 aaKnown RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 OVOL2Q9BRP0 275 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 ZNF471Q9BX82 626 aaPredicted RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 ACTR3CQ9C0K3 210 aaPredicted RBP13.47□□□□□ -0.25
HOXA9-203ENST00000465941 RETNQ9HD89 108 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 DNAH9Q9NYC9 4486 aa13.47□□□□□ -0.25
HOXA9-203ENST00000465941 SPRY2O43597 315 aa13.46□□□□□ -0.25
HOXA9-203ENST00000465941 DUSP14O95147 198 aaKnown RBP13.46□□□□□ -0.25
HOXA9-203ENST00000465941 SEC11BP0C7V7 166 aa13.46□□□□□ -0.25
HOXA9-203ENST00000465941 EIF5AP63241 154 aaKnown RBP13.46□□□□□ -0.25
HOXA9-203ENST00000465941 DEFB135Q30KP9 77 aa13.46□□□□□ -0.25
HOXA9-203ENST00000465941 OR4B1Q8NGF8 309 aa13.46□□□□□ -0.25
HOXA9-203ENST00000465941 PRELID1Q9Y255 219 aa13.46□□□□□ -0.25
HOXA9-203ENST00000465941 ZNF705FA8MVS1 300 aaPredicted RBP13.45□□□□□ -0.26
HOXA9-203ENST00000465941 EIF3GO75821 320 aaKnown RBP eCLIP13.45□□□□□ -0.26
HOXA9-203ENST00000465941 IGKV3-20P01619 116 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms