RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 DNAH5Q8TE73 4624 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 C9orf170A2RU37 121 aa11.28□□□□□ -0.6
COL7A1-204ENST00000462475 RRAS2P62070 204 aaPredicted RBP11.28□□□□□ -0.6
COL7A1-204ENST00000462475 CCDC190Q86UF4 302 aa11.28□□□□□ -0.6
COL7A1-204ENST00000462475 NBDYA0A0U1RRE5 68 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 ATP5G1P05496 136 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 ATP5G3P48201 142 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 TAS2R60P59551 318 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 UBE2MP61081 183 aaKnown RBP11.27□□□□□ -0.61
COL7A1-204ENST00000462475 SELENOTP62341 195 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 PSG3Q16557 428 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 PATE2Q6UY27 113 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 RNF141Q8WVD5 230 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 ARL6Q9H0F7 186 aa11.27□□□□□ -0.61
COL7A1-204ENST00000462475 APOBP04114 4563 aaKnown RBP11.27□□□□□ -0.61
COL7A1-204ENST00000462475 MRPS12O15235 138 aaKnown RBP11.26□□□□□ -0.61
COL7A1-204ENST00000462475 METTL15P1P0C7V9 234 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 HTN1P15515 57 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 DLK1P80370 383 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 SLC38A11Q08AI6 406 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 SPANXN2Q5MJ10 180 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 TMEM14EPQ6UXP3 125 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 TMEM256Q8N2U0 113 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 RPUSD4Q96CM3 377 aaKnown RBP11.26□□□□□ -0.61
COL7A1-204ENST00000462475 C16orf74Q96GX8 76 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 SMIM8Q96KF7 97 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 PPP1R14DQ9NXH3 145 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 FLVCR2Q9UPI3 526 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 LINC00588Q9Y4M8 146 aa11.26□□□□□ -0.61
COL7A1-204ENST00000462475 CBY3A6NI87 242 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 C16orf90A8MZG2 172 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 K7EPK0 472 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 SNRPCP09234 159 aaKnown RBP11.25□□□□□ -0.61
COL7A1-204ENST00000462475 C6orf223Q8N319 242 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 LRRC20Q8TCA0 184 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 SRRQ9GZT4 340 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 ARV1Q9H2C2 271 aa11.25□□□□□ -0.61
COL7A1-204ENST00000462475 NDUFB6O95139 128 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 SCGB1D2O95969 90 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 CDKN1BP46527 198 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 CCL18P55774 89 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 KIR3DS1Q14943 382 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 RNASE8Q8TDE3 154 aaKnown RBP11.24□□□□□ -0.61
COL7A1-204ENST00000462475 NPVFQ9HCQ7 196 aa11.24□□□□□ -0.61
COL7A1-204ENST00000462475 NOP10Q9NPE3 64 aaKnown RBP11.24□□□□□ -0.61
COL7A1-204ENST00000462475 TIMM8BQ9Y5J9 83 aaPredicted RBP11.24□□□□□ -0.61
COL7A1-204ENST00000462475 FNDC10F2Z333 226 aa11.23□□□□□ -0.61
COL7A1-204ENST00000462475 OR4E1P0C645 316 aa11.23□□□□□ -0.61
COL7A1-204ENST00000462475 ANXA7P20073 488 aaKnown RBP11.23□□□□□ -0.61
COL7A1-204ENST00000462475 TEPPQ6URK8 271 aa11.23□□□□□ -0.61
COL7A1-204ENST00000462475 OR10P1Q8NGE3 313 aa11.23□□□□□ -0.61
COL7A1-204ENST00000462475 TMEM263Q8WUH6 116 aaKnown RBP11.23□□□□□ -0.61
COL7A1-204ENST00000462475 PARD6GQ9BYG4 376 aaPredicted RBP11.23□□□□□ -0.61
COL7A1-204ENST00000462475 ZNF331Q9NQX6 463 aaPredicted RBP11.23□□□□□ -0.61
COL7A1-204ENST00000462475 MGAT4CQ9UBM8 478 aa11.23□□□□□ -0.61
COL7A1-204ENST00000462475 RCL1Q9Y2P8 373 aaKnown RBP11.23□□□□□ -0.61
COL7A1-204ENST00000462475 H3BTX0 84 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 SLC17A3O00476 420 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 CXCL2P19875 107 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 ARL16Q0P5N6 197 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 BAK1Q16611 211 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 IAH1Q2TAA2 248 aaPredicted RBP11.22□□□□□ -0.61
COL7A1-204ENST00000462475 LCN15Q6UWW0 184 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 LINC00305Q7Z4B0 112 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 S100A7AQ86SG5 101 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 ZNF546Q86UE3 836 aa11.22□□□□□ -0.61
COL7A1-204ENST00000462475 NAP1L6A6NFF2 107 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 PRAC2D3DTV9 90 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 H7BYZ3 331 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 TSC22D2O75157 780 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 CLINT1Q14677 625 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 C4orf46Q504U0 113 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 GFI1BQ5VTD9 330 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 MORN5Q5VZ52 161 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 TRIQKQ629K1 86 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 ZNF493Q6ZR52 646 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 SSX7Q7RTT5 188 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 SLC50A1Q9BRV3 221 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 CCDC32Q9BV29 185 aa11.21□□□□□ -0.61
COL7A1-204ENST00000462475 LINC00854A0A1B0GVQ3 168 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 GOSR2O14653 212 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 AGPAT2O15120 278 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 BTCP35070 178 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 INPP1P49441 399 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 TAS2R30P59541 319 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 PXDC1Q5TGL8 231 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 LINC00612Q8N6U2 182 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 ZBTB8BQ8NAP8 495 aaPredicted RBP11.2□□□□□ -0.62
COL7A1-204ENST00000462475 MGST2Q99735 147 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 KRTAP1-5Q9BYS1 174 aa11.2□□□□□ -0.62
COL7A1-204ENST00000462475 TRAV26-1A0A087WT03 109 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 COX7A2P2O60397 106 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 UPK1BO75841 260 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 CDK2AP2O75956 126 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 OR5I1Q13606 314 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 OPCMLQ14982 345 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 BPIFA4PQ86YQ2 179 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 OR10J6PQ8NGY7 276 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 TMEM37Q8WXS4 190 aa11.19□□□□□ -0.62
COL7A1-204ENST00000462475 C20orf144Q9BQM9 153 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms