RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 FAAP20Q6NZ36 180 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 SELENOHQ8IZQ5 122 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 LGI3Q8N145 548 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 Q8N814 137 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 OR4D10Q8NGI6 311 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 GLYATL2Q8WU03 294 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM222Q9H0R3 208 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 U3KQ87 197 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 FAM25AB3EWG3 89 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 FAM25CB3EWG5 89 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 FAM25GB3EWG6 89 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 K7EP13 123 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 NOL3O60936 208 aaKnown RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 ZNF324O75467 553 aaPredicted RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 ORM2P19652 201 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 CXCL3P19876 107 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 GATA2P23769 480 aaPredicted RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 PSG3Q16557 428 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 SCGB2B2Q4G0G5 96 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 GFI1BQ5VTD9 330 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 GGNBP1Q5YKI7 109 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM182Q6ZP80 229 aaPredicted RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 CCDC71LQ8N9Z2 235 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 THAP8Q8NA92 274 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 OR13C8Q8NGS7 320 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 DYNC2LI1Q8TCX1 351 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 RBPMSQ93062 196 aaKnown RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 RPUSD4Q96CM3 377 aaKnown RBP5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 GPR82Q96P67 336 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 C20orf144Q9BQM9 153 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 PRR13Q9NZ81 148 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 SLC45A2Q9UMX9 530 aa5.18□□□□□ -1.58
LIMCH1-204ENST00000446625 TRGV1A0A0A0MS02 117 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM127O75204 238 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 B3GALNT1O75752 331 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 CFDP00746 253 aaPredicted RBP5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 CD3DP04234 171 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 CRYGDP07320 174 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 RNASE10Q5GAN6 216 aaKnown RBP5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM268Q5VZI3 342 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 SCXQ7RTU7 201 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 OR52I2Q8NH67 350 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 ZFAND1Q8TCF1 268 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 DTD1Q8TEA8 209 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM147Q9BVK8 224 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 RBKSQ9H477 322 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 GSN-AS1Q9NRJ2 163 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 FUT9Q9Y231 359 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 TMEM56-RWDD3S4R434 201 aa5.17□□□□□ -1.58
LIMCH1-204ENST00000446625 TRAV12-3A0A0B4J271 114 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 TEX13DA0A0J9YY54 714 aaPredicted RBP5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 J3KRW8 73 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 PRAF2O60831 178 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 IGHV3-53P01767 116 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 SULT1A3P0DMM9 295 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 SULT1A4P0DMN0 295 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 CRYBA4P53673 196 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 ATP5IP56385 69 aaPredicted RBP5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 MRPL23Q16540 153 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 NEGR1Q7Z3B1 354 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 CCDC190Q86UF4 302 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 CROCCP3Q8IVE0 287 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 C10orf126Q8N4M7 172 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 C11orf72Q8NBR9 251 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 TERB2Q8NHR7 220 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 MARCH1Q8TCQ1 289 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 C8orf49Q96NF6 230 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 SLIRPQ9GZT3 109 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 NAA60Q9H7X0 242 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 EXTL2Q9UBQ6 330 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 HSPB7Q9UBY9 170 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 PRO0255Q9UI72 69 aa5.16□□□□□ -1.58
LIMCH1-204ENST00000446625 PRAC2D3DTV9 90 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 H3BRN7 92 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 APOA1P02647 267 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 RPL7P18124 248 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 WFDC2Q14508 124 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 LRTM2Q8N967 370 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 BPIFCQ8NFQ6 507 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 LRRC20Q8TCA0 184 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 ST6GAL2Q96JF0 529 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 PYGO2Q9BRQ0 406 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 RTBDNQ9BSG5 229 aaPredicted RBP5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 SHANK2-AS3Q9BTD1 123 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 CCDC59Q9P031 241 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 CACFD1Q9UGQ2 172 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 HHLA3Q9XRX5 114 aa5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 RCL1Q9Y2P8 373 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-204ENST00000446625 A0A087X0K7 114 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 LINC00854A0A1B0GVQ3 168 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 SPINK4O60575 86 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 MT1HL1P0DM35 61 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 S100A7P31151 101 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 ASIPP42127 132 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 FHL2Q14192 279 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 LINC01620Q4KN68 170 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 OR1S1Q8NH92 325 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 ZNF431Q8TF32 576 aaPredicted RBP5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 Q9HAA7 133 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 PAIP2BQ9ULR5 123 aaKnown RBP5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms