RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 MAP1LC3B2A6NCE7 125 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 NBEAP1P0C6P0 100 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 PYYP10082 97 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 TFPI2P48307 235 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 PSG9Q00887 426 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF726P1Q15940 193 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 MBD3L1Q8WWY6 194 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF503Q96F45 646 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 C16orf92Q96LL3 132 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 MAP1LC3BQ9GZQ8 125 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 PLA2G2EQ9NZK7 142 aa13.76□□□□□ -0.21
HDAC6-208ENST00000438518 ARL14EPLP0DKL9 152 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 CD81P60033 236 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 KRTAP10-11P60412 298 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 ALKAL2Q6UX46 152 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 WFDC3Q8IUB2 231 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 LYPD1Q8N2G4 141 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 SUN5Q8TC36 379 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 SAT2Q96F10 170 aaPredicted RBP13.75□□□□□ -0.21
HDAC6-208ENST00000438518 C17orf77Q96MU5 243 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF331Q9NQX6 463 aaPredicted RBP13.75□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF586Q9NXT0 402 aa13.75□□□□□ -0.21
HDAC6-208ENST00000438518 OR11H12B2RN74 326 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 H3BQ15 152 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 IFNA7P01567 189 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 H2AFB1P0C5Y9 115 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 OR10J4P0C629 311 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 TEX261Q6UWH6 196 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 SSX7Q7RTT5 188 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 AAMDCQ9H7C9 122 aa13.74□□□□□ -0.21
HDAC6-208ENST00000438518 HMGB3O15347 200 aaKnown RBP13.73□□□□□ -0.21
HDAC6-208ENST00000438518 HBE1P02100 147 aa13.73□□□□□ -0.21
HDAC6-208ENST00000438518 GCHFRP30047 84 aa13.73□□□□□ -0.21
HDAC6-208ENST00000438518 FHITP49789 147 aa13.73□□□□□ -0.21
HDAC6-208ENST00000438518 MRPL53Q96EL3 112 aaKnown RBP13.73□□□□□ -0.21
HDAC6-208ENST00000438518 MAP6D1Q9H9H5 199 aa13.73□□□□□ -0.21
HDAC6-208ENST00000438518 PRELID1Q9Y255 219 aa13.73□□□□□ -0.21
HDAC6-208ENST00000438518 TRAV1-1A0A0B4J248 108 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 CD7P09564 240 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 PPT1P50897 306 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 BLOC1S1P78537 153 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 ODF3L2Q3SX64 289 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 SFT2D1Q8WV19 159 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 BLNKQ8WV28 456 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 ARL2-SNX15V9GYD0 113 aa13.72□□□□□ -0.21
HDAC6-208ENST00000438518 SORL1Q92673 2214 aa13.71□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF705EA8MWA4 302 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF688P0C7X2 276 aa13.71□□□□□ -0.21
HDAC6-208ENST00000438518 FAM74A1Q5RGS3 127 aa13.71□□□□□ -0.21
HDAC6-208ENST00000438518 ZNF680Q8NEM1 530 aa13.71□□□□□ -0.21
HDAC6-208ENST00000438518 PRR25Q96S07 402 aa13.71□□□□□ -0.21
HDAC6-208ENST00000438518 NOTCH3Q9UM47 2321 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 TRAV8-2A0A0B4J237 113 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 NDUFB4O95168 129 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 DEFB131AP59861 70 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 PSMG4Q5JS54 123 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 IQCF2Q8IXL9 164 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 Q8N1Y9 231 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 FAM24BQ8N5W8 94 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 ARL6IP6Q8N6S5 226 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 NKX6-2Q9C056 277 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-208ENST00000438518 C19orf73Q9NVV2 129 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 UBQLN2Q9UHD9 624 aa13.7□□□□□ -0.22
HDAC6-208ENST00000438518 A0A1W2PRE2 83 aa13.69□□□□□ -0.22
HDAC6-208ENST00000438518 SLC17A3O00476 420 aa13.69□□□□□ -0.22
HDAC6-208ENST00000438518 EIF3GO75821 320 aaKnown RBP eCLIP13.69□□□□□ -0.22
HDAC6-208ENST00000438518 PSG3Q16557 428 aa13.69□□□□□ -0.22
HDAC6-208ENST00000438518 AURKAIP1Q9NWT8 199 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-208ENST00000438518 A8MZ25 164 aa13.68□□□□□ -0.22
HDAC6-208ENST00000438518 FGF8P55075 233 aaPredicted RBP13.68□□□□□ -0.22
HDAC6-208ENST00000438518 FOXI2Q6ZQN5 318 aa13.68□□□□□ -0.22
HDAC6-208ENST00000438518 RXFP4Q8TDU9 374 aa13.68□□□□□ -0.22
HDAC6-208ENST00000438518 LINC00052Q96N35 136 aa13.68□□□□□ -0.22
HDAC6-208ENST00000438518 OTORQ9NRC9 128 aa13.68□□□□□ -0.22
HDAC6-208ENST00000438518 H3BTX0 84 aa13.67□□□□□ -0.22
HDAC6-208ENST00000438518 SNRPCP09234 159 aaKnown RBP13.67□□□□□ -0.22
HDAC6-208ENST00000438518 RANP62826 216 aaKnown RBP13.67□□□□□ -0.22
HDAC6-208ENST00000438518 PMS2P11Q13670 270 aa13.67□□□□□ -0.22
HDAC6-208ENST00000438518 Q9H3A6 140 aa13.67□□□□□ -0.22
HDAC6-208ENST00000438518 MGAM2Q2M2H8 2515 aa13.67□□□□□ -0.22
HDAC6-208ENST00000438518 TAGLN2P37802 199 aaKnown RBP13.66□□□□□ -0.22
HDAC6-208ENST00000438518 CSN1S1P47710 185 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 EBLN2Q6P2I7 272 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 ZNF767PQ75MW2 155 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 ZNF738Q8NE65 137 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 LYPD6BQ8NI32 183 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 TCEAL7Q9BRU2 100 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 MANBALQ9NQG1 85 aa13.66□□□□□ -0.22
HDAC6-208ENST00000438518 IFNA1P01562 189 aa13.65□□□□□ -0.22
HDAC6-208ENST00000438518 ICAM4Q14773 271 aa13.65□□□□□ -0.22
HDAC6-208ENST00000438518 RNF182Q8N6D2 247 aa13.65□□□□□ -0.22
HDAC6-208ENST00000438518 C20orf173Q96LM9 149 aa13.65□□□□□ -0.22
HDAC6-208ENST00000438518 TMPRSS5Q9H3S3 457 aa13.65□□□□□ -0.22
HDAC6-208ENST00000438518 SAV1Q9H4B6 383 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-208ENST00000438518 DUSP14O95147 198 aaKnown RBP13.64□□□□□ -0.23
HDAC6-208ENST00000438518 HLA-DRB4P13762 266 aa13.64□□□□□ -0.23
HDAC6-208ENST00000438518 IGFL4Q6B9Z1 124 aa13.64□□□□□ -0.23
HDAC6-208ENST00000438518 APRG1Q8IVJ8 170 aa13.64□□□□□ -0.23
HDAC6-208ENST00000438518 STHQ8IWL8 128 aa13.64□□□□□ -0.23
HDAC6-208ENST00000438518 EXOC3-AS1Q8N2X6 119 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms