RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 ARMS2P0C7Q2 107 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 PLXNA4Q9HCM2 1894 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 PLXNA3P51805 1871 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 C18orf32Q8TCD1 76 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 VDAC2P45880 294 aaPredicted RBP11.8□□□□□ -0.52
PTPRU-204ENST00000428026 PRR30Q53SZ7 412 aaPredicted RBP11.8□□□□□ -0.52
PTPRU-204ENST00000428026 Q6ZS92 163 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 MDS2Q8NDY4 140 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 TRGV9Q99603 122 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 ABCA4P78363 2273 aa11.8□□□□□ -0.52
PTPRU-204ENST00000428026 SRRM4A7MD48 611 aaKnown RBP11.79□□□□□ -0.52
PTPRU-204ENST00000428026 Q0VG73 95 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 KLRD1Q13241 179 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 C3orf36Q3SXR2 165 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 Q6ZWC4 215 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 LINC01559Q495D7 138 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 C11orf44Q8N8P7 122 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 JPT2Q9H910 190 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 PLEKHB2Q96CS7 222 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 TSSC4Q9Y5U2 329 aaPredicted RBP11.79□□□□□ -0.52
PTPRU-204ENST00000428026 TOMM40O96008 361 aa11.79□□□□□ -0.52
PTPRU-204ENST00000428026 LGALS1P09382 135 aaKnown RBP11.79□□□□□ -0.52
PTPRU-204ENST00000428026 ZNF688P0C7X2 276 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 TMEM219Q86XT9 240 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 WDR81Q562E7 1941 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 GAGE2AQ6NT46 116 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 Q6P435 159 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 KIAA2026Q5HYC2 2103 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 HS3ST6Q96QI5 342 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 DOCK10Q96BY6 2186 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 TMEM213A2RRL7 107 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 CLPSP04118 112 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 IGLC2P0DOY2 106 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 IGLC3P0DOY3 106 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 DPH3P1Q9H4G8 78 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 IGHV1-3A0A0C4DH29 117 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 CFHR2P36980 270 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 ZNF415Q09FC8 603 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 TEX43Q6ZNM6 134 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 SPXQ9BT56 116 aa11.78□□□□□ -0.52
PTPRU-204ENST00000428026 Q86TA4 180 aa11.77□□□□□ -0.52
PTPRU-204ENST00000428026 LAMTOR3Q9UHA4 124 aa11.77□□□□□ -0.52
PTPRU-204ENST00000428026 A0A087WWL8 130 aa11.77□□□□□ -0.53
PTPRU-204ENST00000428026 H0YJW9 148 aa11.77□□□□□ -0.53
PTPRU-204ENST00000428026 ERCC8Q13216 396 aa11.77□□□□□ -0.53
PTPRU-204ENST00000428026 IGHV1-8P0DP01 117 aa11.77□□□□□ -0.53
PTPRU-204ENST00000428026 RSPO3Q9BXY4 272 aaPredicted RBP11.77□□□□□ -0.53
PTPRU-204ENST00000428026 PRSS22Q9GZN4 317 aa11.77□□□□□ -0.53
PTPRU-204ENST00000428026 IGHV2-5P01817 119 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 A0A0G2JNJ9 132 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 IGHV3-53P01767 116 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 ASPHD1Q5U4P2 390 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 RCHY1Q96PM5 261 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 Q9UFV3 132 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 ETDBQ3ZM63 59 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 VGLL1Q99990 258 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 TRAV41A0A0B4J266 112 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 LINC01549A6NIU2 74 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 ITGB1BP1O14713 200 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 IL18BPO95998 194 aa11.76□□□□□ -0.53
PTPRU-204ENST00000428026 RNASE2P10153 161 aaKnown RBP11.76□□□□□ -0.53
PTPRU-204ENST00000428026 CITED2Q99967 270 aaPredicted RBP11.76□□□□□ -0.53
PTPRU-204ENST00000428026 VCYO14598 125 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 FCN3O75636 299 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 IGKV1-16P04430 117 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 WNT2P09544 360 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 ZNF726P1Q15940 193 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 PIP4P1Q86T03 277 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 KLF12Q9Y4X4 402 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 PCNX2A6NKB5 2137 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 C1orf159Q96HA4 380 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 ZNRD1Q9P1U0 126 aa11.75□□□□□ -0.53
PTPRU-204ENST00000428026 IGKV1-6A0A0C4DH72 117 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 IGLL1P15814 213 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 CDPF1Q6NVV7 123 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 LIME1Q9H400 295 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 PLSCR4Q9NRQ2 329 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 FER1L5A0AVI2 2057 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 DOCK11Q5JSL3 2073 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 THBDP07204 575 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 SLAQ13239 276 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 FHL1Q13642 323 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 ASCL4Q6XD76 172 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 FRMPD3Q5JV73 1810 aa11.74□□□□□ -0.53
PTPRU-204ENST00000428026 TRBV6-6A0A0A6YYG2 114 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 TRAV13-1A0A0B4J241 112 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 C9orf118A6NHY6 69 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 C9orf153Q5TBE3 101 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 TNFRSF14Q92956 283 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 TIMM21Q9BVV7 248 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 IGKV1D-17A0A075B6S4 117 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 DTX2Q86UW9 622 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 ZNF114Q8NC26 417 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 K7EP13 123 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 C8orf49Q96NF6 230 aa11.73□□□□□ -0.53
PTPRU-204ENST00000428026 A0A087WX48 190 aa11.72□□□□□ -0.53
PTPRU-204ENST00000428026 VMO1Q7Z5L0 202 aa11.72□□□□□ -0.53
PTPRU-204ENST00000428026 PCNX1Q96RV3 2341 aa11.72□□□□□ -0.53
PTPRU-204ENST00000428026 CADP27708 2225 aa11.72□□□□□ -0.53
PTPRU-204ENST00000428026 TSC2P49815 1807 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms