RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LINC00854A0A1B0GVQ3 168 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 SMCO3A2RU48 225 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 H3BRN7 92 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 H3BTX0 84 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 BOLA2-SMG1P6H3BVE0 249 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 CCNKO75909 580 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 HOXB5P09067 269 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 HOXA5P20719 270 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 TSPOP30536 169 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 CCL18P55774 89 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 ATP5IP56385 69 aaPredicted RBP5.62□□□□□ -1.51
VIM-202ENST00000421459 CLINT1Q14677 625 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 ESRGQ1W209 222 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 GGNBP1Q5YKI7 109 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 OR8A1Q8NGG7 326 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 ENKURQ8TC29 256 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 MARVELD1Q9BSK0 173 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 TMEM147Q9BVK8 224 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 CACFD1Q9UGQ2 172 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 SCP2D1Q9UJQ7 156 aa5.62□□□□□ -1.51
VIM-202ENST00000421459 DNAH8Q96JB1 4490 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 TRAV26-1A0A087WT03 109 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 A0A1B0GVG6 124 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 FAM240BA0A1B0GVZ2 78 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 PRAC2D3DTV9 90 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 SYNGR2O43760 224 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 NDUFB6O95139 128 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 TCRBP04435 133 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 ANXA3P12429 323 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 CXCL3P19876 107 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 VAMP1P23763 118 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 TAS2R60P59551 318 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 AKR1C1Q04828 323 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 PSG3Q16557 428 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 PATE2Q6UY27 113 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 CYP2G1PQ6ZSU1 146 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 ACOT7LQ6ZUV0 252 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 OR4D5Q8NGN0 318 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 SCGB3A2Q96PL1 93 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 SHANK2-AS3Q9BTD1 123 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 PPP1R14DQ9NXH3 145 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 SLC45A2Q9UMX9 530 aa5.61□□□□□ -1.51
VIM-202ENST00000421459 TIMM8BQ9Y5J9 83 aaPredicted RBP5.61□□□□□ -1.51
VIM-202ENST00000421459 GAGE12BA1L429 117 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 J3KRW8 73 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 ADAP1O75689 374 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 GAGE7O76087 117 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 CFDP00746 253 aaPredicted RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 IL5P05113 134 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 OR5G3P0C626 314 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 GAGE12FP0CL80 117 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 GAGE12GP0CL81 117 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 GAGE12IP0CL82 117 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 RRAS2P62070 204 aaPredicted RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 POLR2GP62487 172 aaKnown RBP eCLIP5.6□□□□□ -1.51
VIM-202ENST00000421459 SRPXP78539 464 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 PPP1R1AQ13522 171 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 SAMD13Q5VXD3 122 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 TMEM144Q7Z5S9 345 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 RNASE8Q8TDE3 154 aaKnown RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 RPUSD4Q96CM3 377 aaKnown RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 GNPNAT1Q96EK6 184 aaPredicted RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 C16orf74Q96GX8 76 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 GPR82Q96P67 336 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 SLC25A21Q9BQT8 299 aaPredicted RBP5.6□□□□□ -1.51
VIM-202ENST00000421459 NUDT15Q9NV35 164 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 ZNF586Q9NXT0 402 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 HIGD1AQ9Y241 93 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 TNFRSF18Q9Y5U5 241 aa5.6□□□□□ -1.51
VIM-202ENST00000421459 C7orf66A4D0T2 115 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 PMS2P5A8MQ11 134 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 INMT-MINDY4F8WBC2 141 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 MRPS12O15235 138 aaKnown RBP5.59□□□□□ -1.51
VIM-202ENST00000421459 HYPMO75409 117 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 MED6O75586 246 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 SFT2D2O95562 160 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 LINC00869P0C866 280 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 RAP2BP61225 183 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 B2MP61769 119 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 RPP30P78346 268 aaKnown RBP5.59□□□□□ -1.51
VIM-202ENST00000421459 TMEM128Q5BJH2 165 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 MORN5Q5VZ52 161 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 LRTM2Q8N967 370 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 LRRC20Q8TCA0 184 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 CHAC2Q8WUX2 184 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 ARL6Q9H0F7 186 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 C20orf85Q9H1P6 137 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 Q9H3A6 140 aa5.59□□□□□ -1.51
VIM-202ENST00000421459 STRAPQ9Y3F4 350 aaKnown RBP5.59□□□□□ -1.51
VIM-202ENST00000421459 A0A087X0K7 114 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 DUXBA0A1W2PPF3 345 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 SLC17A3O00476 420 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 PRAF2O60831 178 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 H2AFB2P0C5Z0 115 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 SLC25A6P12236 298 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 RPL7P18124 248 aaKnown RBP5.58□□□□□ -1.52
VIM-202ENST00000421459 ANXA7P20073 488 aaKnown RBP5.58□□□□□ -1.52
VIM-202ENST00000421459 M6PRP20645 277 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 CDKN1BP46527 198 aa5.58□□□□□ -1.52
VIM-202ENST00000421459 SLC38A11Q08AI6 406 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms