RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 Q8N377 158 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 PIFOQ8TCI5 191 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 NDFIP1Q9BT67 221 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 TTTY10Q9BZA0 68 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 BCL2L10Q9HD36 194 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 SCRT2Q9NQ03 307 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CKLFQ9UBR5 152 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF443Q9Y2A4 671 aaPredicted RBP3.77□□□□□ -1.81
VPS13A-207ENST00000419472 LSM5Q9Y4Y9 91 aaKnown RBP3.77□□□□□ -1.81
VPS13A-207ENST00000419472 TRAV27A0A087WT01 109 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 A0A087WX48 190 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 RIIAD1A6NNX1 92 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 HLA-DRB1P01911 266 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 GYPBP06028 91 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 RBMY1FQ15415 496 aaKnown RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 GUSBP11Q6P575 273 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 C2orf66Q6UXQ4 117 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 FA2HQ7L5A8 372 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ZCCHC24Q8N2G6 241 aaKnown RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 OR2K2Q8NGT1 345 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 APOBEC3DQ96AK3 386 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 GNPNAT1Q96EK6 184 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 PLEKHF2Q9H8W4 249 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ANAPC10Q9UM13 185 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ZFHX3Q15911 3703 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 A0A0J9YXV3 536 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 A0A0J9YXY3 114 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 PITX3O75364 302 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 KRASP01116 189 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF728P0DKX0 622 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 IGHV3-43DP0DP04 118 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 GATA2P23769 480 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 GNG3P63215 75 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 SEC11AP67812 179 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 MEF2CQ06413 473 aaPredicted RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 FAM78BQ5VT40 261 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 OTPQ5XKR4 325 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 BAGE3Q86Y29 109 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 BAGE2Q86Y30 109 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 OR2M3Q8NG83 312 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 FNDC9Q8TBE3 224 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 MBD3L1Q8WWY6 194 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ZC2HC1AQ96GY0 325 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 Q96M85 177 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 SPACA5Q96QH8 159 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 SMIM7Q9BQ49 75 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 FAM103A1Q9BTL3 118 aaKnown RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 WDR61Q9GZS3 305 aaKnown RBP3.76□□□□□ -1.81
VPS13A-207ENST00000419472 ZDHHC11Q9H8X9 412 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 TAAR3PQ9P1P4 343 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 IGSF10Q6WRI0 2623 aa3.76□□□□□ -1.81
VPS13A-207ENST00000419472 PCNX3Q9H6A9 2034 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 TMEM212A6NML5 194 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 CA2P00918 260 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 HPNP05981 417 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 HTR1DP28221 377 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF136P52737 540 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 HLA-DRB5Q30154 266 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 KCNS1Q96KK3 526 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 GPER1Q99527 375 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 COMMD5Q9GZQ3 224 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 SLC25A22Q9H936 323 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-207ENST00000419472 FAM206AQ9NX38 181 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 IER3IP1Q9Y5U9 82 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 F2Z2F3 143 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 CRXO43186 299 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-207ENST00000419472 SLC25A6P12236 298 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 MDH2P40926 338 aaKnown RBP3.75□□□□□ -1.81
VPS13A-207ENST00000419472 REG1BP48304 166 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 PAX8Q06710 450 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 MOB1BQ7L9L4 216 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 LHFPL1Q86WI0 220 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 TTC9CQ8N5M4 171 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 VSTM2AQ8TAG5 236 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 C18orf32Q8TCD1 76 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 SETD2Q9BYW2 2564 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-207ENST00000419472 POLR1DQ9Y2S0 133 aa3.75□□□□□ -1.81
VPS13A-207ENST00000419472 RAI1Q7Z5J4 1906 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-207ENST00000419472 TRAV9-1A0A075B6T8 112 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 ZFP92A6NM28 416 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 H0Y9J4 135 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 TMEM250H0YL14 139 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF324O75467 553 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 GYPAP02724 150 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 DBIP07108 87 aaKnown RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 RBMXP38159 391 aaKnown RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF133P52736 654 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 FMODQ06828 376 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 PRR30Q53SZ7 412 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 TCF23Q7RTU1 214 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 ATOH7Q8N100 152 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 OR10AG1Q8NH19 301 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 CT55Q8WUE5 264 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 RTN4IP1Q8WWV3 396 aaPredicted RBP3.74□□□□□ -1.81
VPS13A-207ENST00000419472 PP6455Q8WZ26 134 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 AP1S3Q96PC3 154 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 SPIN2AQ99865 258 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 SPIN2BQ9BPZ2 258 aa3.74□□□□□ -1.81
VPS13A-207ENST00000419472 PRSS27Q9BQR3 290 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms