RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 NMNAT3Q96T66 252 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 SDF2Q99470 211 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 WDR61Q9GZS3 305 aaKnown RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 NAA60Q9H7X0 242 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 PLEKHJ1Q9NW61 149 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 POLR1DQ9Y2S0 133 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 WASHC3Q9Y3C0 194 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 LY96Q9Y6Y9 160 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 R4GMQ9 66 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 GBF1Q92538 1859 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 COL4A4P53420 1690 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 QSER1Q2KHR3 1735 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 TRAV27A0A087WT01 109 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 TRAV38-1A0A0B4J264 116 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 A8MUU9 505 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 ZNF878C9JN71 531 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 F8W1H4 67 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 UPK2O00526 184 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 PLPP3O14495 311 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 HCRTO43612 131 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 GYPAP02724 150 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 GYPBP06028 91 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 GZMHP20718 246 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 HIST1H1TP22492 207 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 OPRM1P35372 400 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 ZNF93P35789 620 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 CCR2P41597 374 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 CRYBA4P53673 196 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 TCTAP57738 103 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 CCL20P78556 96 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 HIST1H1AQ02539 215 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 ZNF90Q03938 601 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 HSD52Q0P140 79 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 OR8B8Q15620 311 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 LTC4SQ16873 150 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 SP6Q3SY56 376 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 MRPL2Q5T653 305 aaKnown RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 LINC01590Q5TEZ4 76 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 C1orf140Q5VVS0 124 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 UNQ5815/PRO19632Q6UWF5 114 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 SELENOHQ8IZQ5 122 aaKnown RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 LRRC25Q8N386 305 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 ZIC4Q8N9L1 334 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 ST6GALNAC3Q8NDV1 305 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 OR5C1Q8NGR4 320 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 OR2K2Q8NGT1 345 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 OR2AE1Q8NHA4 323 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 SGMS2Q8NHU3 365 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 FAM57AQ8TBR7 257 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 RNF133Q8WVZ7 376 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 WFDC6Q9BQY6 131 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 LINC00470Q9BZP3 86 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 TMEM191AQ9H0A3 160 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 LINC00574Q9H8X3 128 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 MRPL16Q9NX20 251 aaKnown RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 NAT8BQ9UHF3 227 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 CYSLTR1Q9Y271 337 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 HS3ST2Q9Y278 367 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 KLF13Q9Y2Y9 288 aaPredicted RBP2.63□□□□□ -1.99
VPS54-204ENST00000416400 FOCADQ5VW36 1801 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 ARFGEF1Q9Y6D6 1849 aa2.63□□□□□ -1.99
VPS54-204ENST00000416400 NRAPQ86VF7 1730 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 COL18A1P39060 1754 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 KIR2DS1A0A191URI9 304 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 CTXND1A0A1B0GTU2 59 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 LOC389332A0A1B0GUA5 103 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 A0A1B0GWA3 101 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 C7orf71A4D174 169 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TMEM262E9PQX1 116 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 H7C1C5 153 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 K7EP34 96 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TAX1BP3O14907 124 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TTRP02766 147 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 FABP2P12104 132 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 CRYBB3P26998 211 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 QRFPP83859 136 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 SRSF6Q13247 344 aaKnown RBP2.62□□□□□ -1.99
VPS54-204ENST00000416400 LRRC75BQ2VPJ9 315 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TMEM97Q5BJF2 176 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 CLLU1OSQ5K130 101 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TIMM23BQ5SRD1 257 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 BVES-AS1Q5T3Y7 98 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 FAM78BQ5VT40 261 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 FAM104BQ5XKR9 115 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 GLIPR1L1Q6UWM5 242 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 Q6ZT83 130 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 LYPD6Q86Y78 171 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 OR8I2Q8N0Y5 310 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 C5orf17Q8NAS9 161 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 PFN4Q8NHR9 129 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 VSTM2AQ8TAG5 236 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 KLF14Q8TD94 323 aaPredicted RBP2.62□□□□□ -1.99
VPS54-204ENST00000416400 BLNKQ8WV28 456 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 RMI2Q96E14 147 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 DERL1Q9BUN8 251 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 SH3BGRL3Q9H299 93 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 ZNF286AQ9HBT8 521 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 KCNIP2Q9NS61 270 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 TAS2R4Q9NYW5 299 aa2.62□□□□□ -1.99
VPS54-204ENST00000416400 IL36BQ9NZH7 164 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms