RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RBMY1BA6NDE4 496 aaKnown RBP6.9□□□□□ -1.3
SYNE1-211ENST00000413186 RBMY1EA6NEQ0 496 aaKnown RBP6.9□□□□□ -1.3
SYNE1-211ENST00000413186 OR11H12B2RN74 326 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 H3BUT2 72 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 RBMY1DP0C7P1 496 aaKnown RBP6.9□□□□□ -1.3
SYNE1-211ENST00000413186 RBMY1A1P0DJD3 496 aaKnown RBP6.9□□□□□ -1.3
SYNE1-211ENST00000413186 RBMY1CP0DJD4 496 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 RIGQ13278 110 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 TMEM144Q7Z5S9 345 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 OR11H1Q8NG94 326 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 OR11H2Q8NH07 326 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 SNURFLB1AK76 121 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 IGKV1-5P01602 117 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 TRACP01848 142 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 MIC13Q5XKP0 118 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 OR51G1Q8NGK1 321 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 CSPG4Q6UVK1 2322 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 NOTCH3Q9UM47 2321 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 CCDC168Q8NDH2 2452 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 PF4P02776 101 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 GNG5P63218 68 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 CYP2G1PQ6ZSU1 146 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 OR11H6Q8NGC7 330 aa6.9□□□□□ -1.3
SYNE1-211ENST00000413186 ZNF625Q96I27 306 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-211ENST00000413186 SNAI2O43623 268 aa6.9□□□□□ -1.31
SYNE1-211ENST00000413186 SRP19P09132 144 aaKnown RBP6.9□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM219Q86XT9 240 aa6.9□□□□□ -1.31
SYNE1-211ENST00000413186 KLK15Q9H2R5 256 aa6.9□□□□□ -1.31
SYNE1-211ENST00000413186 IGKV3-7A0A075B6H7 116 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 C2orf83Q53S99 150 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 PRSS57Q6UWY2 283 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 SPINK8P0C7L1 97 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 CX3CL1P78423 397 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 RHOGP84095 191 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 CD69Q07108 199 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 CPAMD8Q8IZJ3 1885 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 TOMM7Q9P0U1 55 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 FRYQ5TBA9 3013 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 A8MWV9 139 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 MMP23AO75900 390 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 C8orf46Q8TAG6 207 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 ZFYVE26Q68DK2 2539 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 WIPF3A6NGB9 483 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 PRSS47A8MTI9 375 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 FCN3O75636 299 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 P01737 135 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 LOXL1Q08397 574 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-211ENST00000413186 SPANXN1Q5VSR9 72 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 RUSC1-AS1Q66K80 236 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 SPANXA1Q9NS26 97 aa6.89□□□□□ -1.31
SYNE1-211ENST00000413186 TRAV9-1A0A075B6T8 112 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 H3BMM0 161 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 PVRIGQ6DKI7 326 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 C11orf71Q6IPW1 123 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 NRGNQ92686 78 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 UBE2WQ96B02 151 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 LAMTOR3Q9UHA4 124 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 WDR83OSQ9Y284 106 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 SELENOKQ9Y6D0 94 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 TNCP24821 2201 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 HLA-DQA1P01909 254 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 CNTFRP26992 372 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 HOXD3P31249 432 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-211ENST00000413186 ZNF585BQ52M93 769 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 SHANK1Q9Y566 2161 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 TRBV9A0A0B4J1U6 114 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 FNDC10F2Z333 226 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 NDUFB4O95168 129 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 IGKV1-16P04430 117 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 GCHFRP30047 84 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM14EPQ6UXP3 125 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 HIVEP2P31629 2446 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 CD5LO43866 347 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 LEPROTL1O95214 131 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 IL6RP08887 468 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-211ENST00000413186 LGALS1P09382 135 aaKnown RBP6.88□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM170BQ5T4T1 132 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 FNDC4Q9H6D8 234 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM160Q9NX00 188 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 CDC42EP3Q9UKI2 254 aa6.88□□□□□ -1.31
SYNE1-211ENST00000413186 DYSFO75923 2080 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 MYOD1P15172 320 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 RBMY1FQ15415 496 aaKnown RBP6.87□□□□□ -1.31
SYNE1-211ENST00000413186 USMG5Q96IX5 58 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 PEMTQ9UBM1 199 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 IGHV3-48P01763 117 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 HLA-DRB1P01911 266 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 APCSP02743 223 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 C10orf55Q5SWW7 151 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 TEX38Q6PEX7 206 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 HIST1H2BAQ96A08 127 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 ARL14EPLP0DKL9 152 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 ZNF134P52741 427 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 TFF3Q07654 80 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 CLEC19AQ6UXS0 136 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 C16orf92Q96LL3 132 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 ZNF462Q96JM2 2506 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 TRAV5A0A0B4J249 113 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 HOXB4P17483 251 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-211ENST00000413186 PSG9Q00887 426 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms